| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1793032 = | 137 (0.330) | 8 (0.020) | 5/96 | NT | 6.3% | coding (168/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | CP009273 | 1793061 = | 120 (0.340) | coding (139/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
Only 100 of 329 total aligned reads displayed.
CCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTT > CP009273/1792965‑1793099 | ccAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:5108449‑M1/1‑68 (MQ=255)ccAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:26541824‑M1/1‑68 (MQ=255) ataatgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtga < 1:10581133‑M1/1‑1 (MQ=255) ataatgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtga < 1:4836374‑M1/1‑1 (MQ=255) taatgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtga > 1:22856050‑M1/66‑66 (MQ=255) taatgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGc > 1:21023110‑M1/66‑68 (MQ=255) aGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:11243007‑M1/1‑66 (MQ=255) aGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:13947484‑M1/1‑66 (MQ=255) aGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:19868854‑M1/1‑66 (MQ=255) aatgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtga < 1:7960310‑M1/1‑1 (MQ=255) aatgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtga < 1:16087823‑M1/1‑1 (MQ=255) aatgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtga < 1:19522498‑M1/1‑1 (MQ=255) tgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTg < 1:26117448‑M1/5‑1 (MQ=255) tgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTg < 1:8498694‑M1/5‑1 (MQ=255) tgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGc > 1:1681328‑M1/63‑68 (MQ=255) tgtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGc > 1:15507403‑M1/63‑68 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTTATAACCGCACCAGC < 1:10789843‑M1/65‑1 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:21171326‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:21511983‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:28419663‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG < 1:29176586‑M1/67‑1 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:73597‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:17964317‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:25268353‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:3556480‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:31132389‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:1711258‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:10231930‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:33724227‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:13563984‑M1/1‑67 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGC < 1:33926437‑M1/65‑1 (MQ=255) tCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCCCACCAGCT < 1:12619953‑M1/66‑1 (MQ=255) gtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGcc < 1:10003980‑M1/7‑1 (MQ=255) gtgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGcc < 1:6342867‑M1/7‑1 (MQ=255) tgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGcc < 1:26204839‑M1/7‑1 (MQ=255) tgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGcc < 1:14309133‑M1/7‑1 (MQ=255) tgcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGcc < 1:3256430‑M1/7‑1 (MQ=255) gcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGCCg > 1:24075990‑M1/60‑67 (MQ=255) gcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGCCg > 1:32509357‑M1/60‑67 (MQ=255) gcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGCCg > 1:12829693‑M1/60‑67 (MQ=255) ccgggtcgaatatttgggtaaaaaagggcactaaacccttcagatgacgaccctgcgtgAGCTGCCg > 1:22682569‑M1/60‑67 (MQ=255) tttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGAc < 1:1320682/68‑1 (MQ=255) tttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGAc > 1:27823887/1‑68 (MQ=255) tttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGAc < 1:28661373/68‑1 (MQ=255) tttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGAc < 1:15147895/68‑1 (MQ=255) ttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACg < 1:14098277/68‑1 (MQ=255) aCGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:27584485/68‑1 (MQ=255) aCGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:3165962/68‑1 (MQ=255) gcgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct > 1:31415052/1‑68 (MQ=255) gcgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct > 1:10187076/1‑68 (MQ=255) gcgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct < 1:29578086/68‑1 (MQ=255) cgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct > 1:4149799/1‑67 (MQ=255) cgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct > 1:31509337/1‑67 (MQ=255) gcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCtcttc < 1:16174335/68‑1 (MQ=255) gcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCtcttc < 1:30789000/68‑1 (MQ=255) tCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGc < 1:5200069‑M2/68‑2 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:17516078‑M2/68‑6 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:23473874‑M2/68‑6 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCCCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:11716014‑M2/68‑6 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:14930345‑M2/1‑62 (MQ=255) gcCAGCTGAACCTGCTCTTTCGCTTCGGTGATAACCGCACCAGCGGCCGGACGCTCTTCTGGcgccag > 1:23230781‑M2/1‑62 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:10950507‑M2/66‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:11803887‑M2/66‑6 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:28810896‑M2/1‑60 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:13027329‑M2/1‑60 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:21639033‑M2/1‑60 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:9179464‑M2/1‑60 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:18914893‑M2/1‑60 (MQ=255) ctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGccaggagagcgtccggcagcgggt > 1:20264580‑M1/1‑44 (MQ=255) tgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACg < 1:20319977/68‑1 (MQ=255) gAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGc < 1:27524558/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagctggtgcggt > 1:32798696‑M2/1‑52 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:27078821/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:14637356/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:25868549/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:6039153/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCCCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:3910307/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:22119422/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:18609981/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:8857878/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:4679088/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTGCTGGCGGCAGCTCACGCAGGgt < 1:23561840/68‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:16440998/68‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:3030672/68‑1 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagctggtgcggttatcaacgaagcg > 1:17398979‑M2/1‑39 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGa < 1:24797439/67‑1 (MQ=255) cGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAgg < 1:22975394/68‑1 (MQ=255) gTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAggg < 1:6954981/68‑1 (MQ=255) tAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAg > 1:32279802/1‑68 (MQ=255) tAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAg > 1:18667892/1‑68 (MQ=255) accctgcgtgAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAg < 1:34443705‑M1/58‑1 (MQ=255) aaCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt < 1:24414032/68‑1 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:26743254/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:19084879/1‑67 (MQ=255) ccGCACCAGCTCCCGGACGCGCTTCTGGcggcagctggtgcggttatcaacgaagcgaaagagcaggt > 1:25551949‑M2/1‑28 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtt > 1:29284719/1‑68 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:29321906/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:8127626/68‑1 (MQ=255) AGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttttt < 1:27663086‑M1/68‑1 (MQ=255) AGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttttt < 1:9349831‑M1/68‑1 (MQ=255) | CCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTT > CP009273/1792965‑1793099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |