| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1793032 = | 137 (0.330) | 8 (0.020) | 5/96 | NT | 6.3% | coding (168/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | CP009273 | 1793061 = | 120 (0.340) | coding (139/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
Only 100 of 260 total aligned reads displayed.
GCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT > CP009273/1792995‑1793126 | ctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc > 1:20016320/1‑68 (MQ=255) ctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc > 1:21603416/1‑68 (MQ=255) ctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc > 1:26591595/1‑68 (MQ=255) tgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACg < 1:33908607/68‑1 (MQ=255) aaCCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCa > 1:13176316/1‑68 (MQ=255) aCCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCa < 1:31229834/67‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:27078821/1‑68 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCCCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:3910307/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:23201441/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:15448114/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:293028/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:31888010/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:18567684/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:22119422/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:3696958/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:10371182/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:21126875/68‑1 (MQ=255) cttaacccttcagatgacgaccctgcgtgagctgccgccagaagagcgtccggcagctCACGCAGGgt < 1:34443705‑M2/10‑1 (MQ=255) ctctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcg > 1:973757/1‑68 (MQ=255) tctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcg > 1:27636264/1‑67 (MQ=255) tctTTCGCTTCGTTGATAACCGCACAAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgt < 1:15040915/68‑1 (MQ=255) ctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgtc < 1:24158695/68‑1 (MQ=255) tttCTCGTCGTTGATTACGGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:23550222/68‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:2606907/68‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:1358447/68‑1 (MQ=255) tCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATc < 1:9072606/68‑1 (MQ=255) cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCt < 1:26280856/68‑1 (MQ=255) cagatgacgcccctgcgtgagctgccgccagaagagcgtccggcagctCACGCAGGGTCGTCATCTGa < 1:34250028‑M2/20‑1 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGaa > 1:31567463/1‑68 (MQ=255) cGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAgg < 1:22975394/68‑1 (MQ=255) cGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAgg < 1:1225908/68‑1 (MQ=255) tgacgaccctgcgggcgctgccgccagaagagcgcccggcagctCACGCAGGGTCGTCATCTGAAggg < 1:2959111‑M2/24‑1 (MQ=255) tcacgaccctgcgtgagctgccgccagaagagcgcccggcagctCACGCAGGGTCGTCATCTGAAgg < 1:23044627‑M2/23‑1 (MQ=255) gTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAggg < 1:6954981/68‑1 (MQ=255) acgaccctgcgtgagccgccgccagaacagcggccggcagctCACGCAGGGTCGTCATCTGAAGGGt < 1:10087961‑M2/25‑1 (MQ=255) accctgcgtgAGCTGCCGGACGCTCTTCTGGCGGCAGCTCCCGCAGGGTGGTCATCTGAAGGGTTAAg < 1:19219460‑M1/58‑1 (MQ=255) accctgcgtgAGCTGCCGGACGCTCGTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAg < 1:19261065‑M1/58‑1 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:27531915/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:8042431/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:31029617/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:14568937/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:24438388/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:24915682/1‑67 (MQ=255) ccGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGc < 1:12795657/68‑1 (MQ=255) aCCAGCTGCCGGACTCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGGTAAGTGCCCtt < 1:33678935/68‑1 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtt > 1:8225429/1‑68 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:29321906/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:10814161/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:14132878/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGGTAAGTGCCCttt > 1:16090785/1‑68 (MQ=255) GCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtttttt < 1:29124826‑M1/68‑1 (MQ=255) GCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtttttt < 1:14073383‑M1/68‑1 (MQ=255) TGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTa < 1:20510658‑M1/67‑1 (MQ=255) CGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa < 1:30213887‑M1/68‑1 (MQ=255) CGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa > 1:8865947‑M1/1‑68 (MQ=255) GGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCaa > 1:32341279‑M1/1‑68 (MQ=255) aCGCTCTTCTGGCGGCGGCTCCCGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAat > 1:7259873/1‑68 (MQ=255) aCGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCaaa < 1:515346/67‑1 (MQ=255) aCGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCaaa < 1:11039780/67‑1 (MQ=255) aCGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAat > 1:8583211/1‑68 (MQ=255) cGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAata < 1:27251676/68‑1 (MQ=255) gCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAatat > 1:16655935/1‑68 (MQ=255) ctGGCGGCAGCTCCCGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAc > 1:6142132/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:32763653/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:26414546/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:5697098/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:24074475/1‑67 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTTAGTGCCCTTTTTTACCCAAATATTCGacccgg > 1:22682569‑M2/9‑66 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACgcgc > 1:28753706‑M2/9‑67 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACgcgc > 1:4189370‑M2/9‑67 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACgcgc > 1:14696033‑M2/9‑67 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACgcgc > 1:480466‑M2/9‑67 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACgcgc > 1:13963897‑M2/9‑67 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACgcgc > 1:25550381‑M2/9‑67 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACgcgc > 1:18612712‑M2/9‑67 (MQ=255) cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACgcgc > 1:32509357‑M2/9‑67 (MQ=255) ggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGcac < 1:12928657‑M2/61‑1 (MQ=255) ggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGcac < 1:10003980‑M2/61‑1 (MQ=255) ggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGcac < 1:16510151‑M2/61‑1 (MQ=255) ggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGca < 1:21813143‑M2/60‑1 (MQ=255) ggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGca < 1:15963861‑M2/60‑1 (MQ=255) ggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGca < 1:18923621‑M2/60‑1 (MQ=255) ggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGca < 1:17486017‑M2/60‑1 (MQ=255) gcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGCCGCGgaca > 1:173955‑M2/7‑68 (MQ=255) cagctCACGCGGGGTGTTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGcaca < 1:16246522‑M2/62‑1 (MQ=255) cagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGcaca < 1:8498694‑M2/62‑1 (MQ=255) cagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGcaca < 1:26117448‑M2/62‑1 (MQ=255) tgctCACGCAGGTTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAtt < 1:20291829‑M2/64‑1 (MQ=255) agctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAt < 1:27737047‑M2/63‑1 (MQ=255) agctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAt < 1:11270126‑M2/63‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGGCCTTTTTTACCCAAATATTCGCCGCGCACATTAt < 1:10269579‑M2/66‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAtt < 1:17000966‑M2/64‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAtt < 1:23713780‑M2/64‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAtt < 1:19522498‑M2/64‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTa > 1:22856050‑M2/2‑66 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTa < 1:28631070‑M2/65‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAt < 1:4836374‑M2/66‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAt < 1:7916615‑M2/66‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAt < 1:30467455‑M2/66‑1 (MQ=255) tCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAt < 1:31439861‑M2/66‑1 (MQ=255) | GCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT > CP009273/1792995‑1793126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |