| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2548559 | NA (NA) | 6 (0.020) | 4/92 | NT | NA | noncoding (9/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2548565 | NA (NA) | noncoding (15/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 189 total aligned reads displayed.
TTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2548483‑2548559‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgggtgtCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCAT < CP009273/2548565‑2548500 TTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAAT > 1:24786054/1‑68TTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAAT > 1:228744/1‑68 TTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATG < 1:6359650/68‑1 TTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAAT < 1:23684553/67‑1 TTTCGGGTAAGGGTTCATGATAAAGATGGGGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAAT < 1:29837596/67‑1 GGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGG < 1:10170091/68‑1 GGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGG < 1:5207072/68‑1 GGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGG < 1:29360002/68‑1 GGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGG > 1:21932279/1‑68 GTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGG < 1:5322140/67‑1 TAAGGGTTCATGATAAAGATTGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:817077/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:33715438/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:32666446/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:32342636/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:31556820/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:3114529/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:20658440/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:16907541/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:2112182/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:26785207/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:26153872/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:25018220/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:34139117/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:7414824/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:33759254/67‑1 TAAGGGGTCCTGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:11167323/67‑1 AAGGGTTCATGATAAAGATTGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:12483864/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:23154741/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:15776720/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:13378514/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:10896490/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:14813021/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTG < 1:14738753/67‑1 GTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTCCT > 1:3356619/1‑67 ATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTCCTACAACACCCGGCAT > 1:14231286/1‑68 ACGGGTCTTTTTCATGATGTTAATGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGA > 1:4226893/1‑67 TCTTTTTCATGATGTTAATGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGCCCCGT > 1:24487072/1‑67 TCTTTTTCATGATGTTAATGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGT > 1:10307365/1‑67 TGCCGGGTGTCGTACAACAACCGGCATTTACATCATGAAAAAGTCCCGTACAGCCAATTTGCACCAT < 1:24106804/67‑1 TGCCGGGTGTCCTACACCACCCGGCATTAACATCATGAAAAAGCCCCGTACAGCCAATTTGCACga > 1:3895255/1‑64 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:8654265/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:605176/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:682615/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:2739371/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:4287176/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:31965553/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:25680528/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:16625538/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:1454985/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:11954869/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCA < 1:24955926/66‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCA < 1:33614537/66‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCA < 1:33573722/66‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCA < 1:26486205/66‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCA < 1:7133452/66‑1 TGCCGGGTGGCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:13971667/67‑1 GCCGGTTGTCCTACAACACCCGGCATTAACATCATGAAAAAGCCCCGTACAGCCAGTTTGCACCATCT > 1:16111082/1‑68 GCCGGGTGTCCTACAANACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:18907279/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCT < 1:2801462/68‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCT > 1:15129600/1‑68 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:4533015/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:25235302/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:23871218/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:18441777/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:18957915/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:18988371/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:19029818/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:15667320/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:28342888/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:9270435/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:20345627/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:14410061/67‑1 GCCGGGTGTCCTACAACACCCCGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCT < 1:14529112/68‑1 CCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGCCCCGTACAGCCAATTTGCACCATCgt > 1:29003278/1‑66 CGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTT < 1:9888345/67‑1 GGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTA > 1:16176226/1‑67 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC > 1:33791826/1‑68 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTAT < 1:176508/67‑1 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTAT < 1:30192850/67‑1 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTAT < 1:29926315/67‑1 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTAT < 1:15426436/67‑1 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTAT < 1:22062074/67‑1 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTAT < 1:22287149/67‑1 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTAT < 1:9187064/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAACGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:17351502/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA > 1:3575488/1‑68 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:26392088/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:12343780/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:10819004/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:28172380/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:25824920/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:5046501/67‑1 GTCCTACAACACCCGGCATTATAATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:27082618/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:24022330/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:5920777/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:19844940/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACAATCTTTATCAT > 1:19398531/1‑68 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGAACAGCCAATTTGCACCATCTTTATCAT > 1:6613410/1‑68 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGAACAGCCAATTTGCACCATCTTTATCA < 1:5388077/67‑1 GTCCTACAACAACCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:27956929/67‑1 TTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2548483‑2548559‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgggtgtCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCAT < CP009273/2548565‑2548500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |