| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3147712 | 307 (0.740) | 19 (0.050) | 9/94 | NT | 6.3% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | CP009273 | = 3147725 | 307 (0.880) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
CCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3147638‑3147712‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatgcgcGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG < CP009273/3147725‑3147660 CCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCGAAATTGC > 1:30080639/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCG > 1:27704754/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCG > 1:8699585/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCG > 1:20390836/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCG > 1:7048186/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCG > 1:2115496/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCG > 1:25255003/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCG > 1:22595327/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCG > 1:33681668/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGC < 1:11451429/67‑1 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGC > 1:14504129/1‑67 CATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGAT > 1:18436191/1‑67 ATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGC < 1:20304844/68‑1 ATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGC < 1:21627846/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCG < 1:23960649/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCG < 1:23060004/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCG < 1:30012184/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCG < 1:15562785/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCG < 1:27131208/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCG < 1:13987559/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCG < 1:6175929/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCG < 1:799332/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGC > 1:26415016/1‑67 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTAACGGCTAAATTGCGATGCG < 1:4886386/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTATAAACTCACGGCTAAATTGCGATGCG < 1:3831274/68‑1 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGCTGC > 1:27404411/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGC > 1:27369636/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGC > 1:23938617/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGC > 1:32703011/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGC > 1:9677315/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGC > 1:9829713/1‑66 GCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTCG > 1:32773578/1‑68 CACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCA < 1:7835769/67‑1 CCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTTTGAAAGCGCATCGCAATTTA > 1:29601454/1‑68 CCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTA > 1:24396293/1‑68 AGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCG > 1:30108099/1‑68 AGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCG > 1:17739886/1‑68 GTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGGAATTTAGCCGg > 1:17414734/1‑67 GTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGT > 1:11967664/1‑68 GTAACGTTTAAACTCACGGCTAAATTGCGATGCGCGGCGGGTATGAAAGCGCATCGCAATTTAGCCGT > 1:12433526/1‑68 CGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGT > 1:15673990/1‑68 CGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGT > 1:26782757/1‑68 CGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGT > 1:8158543/1‑68 CGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGT > 1:12199232/1‑68 CGTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCAGCGCAATTTAGCCGTGAGT > 1:15003520/1‑68 GTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTTTGAAAGCGCTTCGCAATTTAGCCGTGAGTg > 1:21928740/1‑67 GTTTAAACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTT > 1:22267717/1‑68 ACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACG > 1:16931823/1‑68 ACTCACGGCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACG > 1:10856890/1‑68 GCTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTC > 1:21912825/1‑68 CTAAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCG > 1:23860209/1‑68 ATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGT > 1:14342600/1‑68 ATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGT > 1:22128694/1‑68 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:30823979/1‑67 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:9632762/1‑67 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:18216561/1‑67 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:21986522/1‑67 GCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGAC > 1:30883956/1‑68 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGC < 1:5258329/68‑1 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGC < 1:22272813/68‑1 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGC < 1:13877501/68‑1 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:11337406/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:13157605/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:13428373/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:28791818/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:25091231/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG < 1:22794489/67‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG < 1:25337519/68‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG > 1:25530924/1‑68 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCC < 1:8917438/67‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCC < 1:21217183/67‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCC < 1:21262507/67‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATATAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG > 1:12279107/1‑68 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:34199856/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:3838061/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:15409646/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:16485356/68‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGGCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:12089108/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:5366258/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:18127102/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG < 1:8201319/68‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG < 1:2178051/68‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:6922828/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:23439932/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:13031593/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:4172021/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:34287465/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:14868814/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG < 1:33399058/68‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG < 1:29522583/68‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:14829266/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:31001680/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:16614874/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG < 1:5520783/67‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG < 1:8478415/67‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG < 1:32700744/67‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG < 1:2004126/67‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGGGAGTTTAAACGTTAGTTCGGTGTGACGCCGGGG > 1:14971456/1‑68 CCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3147638‑3147712‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatgcgcGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG < CP009273/3147725‑3147660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |