| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3147712 | 307 (0.740) | 19 (0.050) | 9/94 | NT | 6.3% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | CP009273 | = 3147725 | 307 (0.880) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
Only 100 of 502 total aligned reads displayed.
TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGATCATCATCCGCG > CP009273/3147645‑3147778 | accgtctgcataaggcgcggatgatgatcatccatgacggcatgaaggccagcgcagcaGCGATgcgc < 1:24396328‑M1/9‑1 (MQ=255)accgtctgcataaggcgcggatgatgatcatccatgacggcatgaaggccagcgcagcaGCGATgcgc < 1:2711677‑M1/9‑1 (MQ=255) cTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCt < 1:2379183/68‑1 (MQ=255) ttGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCtt > 1:12710058/1‑68 (MQ=255) tGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCttt < 1:24866075/68‑1 (MQ=255) tGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCttt < 1:31514168/68‑1 (MQ=255) gCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTATAAACTCACGGCTAAATTGCGATGCGCTTTc > 1:13093787/1‑68 (MQ=255) cTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGcc > 1:20307789/1‑67 (MQ=255) ccccGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACgc > 1:4172021‑M2/1‑66 (MQ=255) cccGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACgc < 1:5520783‑M2/67‑3 (MQ=255) ccGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACgcgc < 1:3838061‑M2/68‑5 (MQ=255) gTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACgcgcatcgc > 1:30883956‑M2/1‑59 (MQ=255) cacaCCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCgtcggctatgaaagcgcatcgca < 1:7835769‑M1/67‑24 (MQ=255) cacaCCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACgcgcatcgca > 1:21986522‑M2/1‑57 (MQ=255) cacaCCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgct < 1:33756900/67‑1 (MQ=255) cacaCCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgct < 1:25248354/67‑1 (MQ=255) cacaCCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgct < 1:27922635/67‑1 (MQ=255) cacaCCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgct < 1:25365577/67‑1 (MQ=255) cacaCCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgct < 1:16683524/67‑1 (MQ=255) cacaCCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgct < 1:32255212/67‑1 (MQ=255) acacCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACgcgcatcgcaat > 1:14342600‑M2/1‑56 (MQ=255) acCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgctgct > 1:10209709/1‑67 (MQ=255) acCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgctgct > 1:2315894/1‑67 (MQ=255) acCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgctgct > 1:25745603/1‑67 (MQ=255) acCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCgctgct > 1:12985578/1‑67 (MQ=255) ccGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCtgctgc < 1:1042700/68‑1 (MQ=255) ccGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCtgctgc < 1:30498524/68‑1 (MQ=255) ccGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCtgctgc < 1:31062502/68‑1 (MQ=255) ccGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCtgctgc > 1:13401819/1‑68 (MQ=255) gAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACgcgcatcgcaatttagc > 1:21912825‑M2/1‑51 (MQ=255) gTAACGTTTAAACTCACGGCTAAATTGCGATGCGCgtcggctatgaaagcgcatcggaatttagccgg > 1:17414734‑M1/1‑35 (MQ=255) gTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTg > 1:8030958/1‑67 (MQ=255) gTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTg > 1:30095082/1‑67 (MQ=255) aaCGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTgg < 1:12212894/66‑1 (MQ=255) aaCGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTgg > 1:34130605/1‑66 (MQ=255) aaCGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGcc < 1:20786463/68‑1 (MQ=255) aaCGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGcc < 1:29435291/68‑1 (MQ=255) cGTTTAAACTCACGGCTAAATTGCGATGCGCgtcggctatgaaagcgcatcgcaatttagccgtgagt > 1:26782757‑M1/1‑31 (MQ=255) cGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGc > 1:18553493/1‑40 (MQ=255) gTTTAAACTCACGGCTAAATTGCGATGCGCgtcggctatgaaagcgcatcgcaatttagccgtgagtt > 1:22267717‑M1/1‑30 (MQ=255) gTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTc > 1:916367/1‑68 (MQ=255) gTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTc > 1:33356270/1‑68 (MQ=255) aCTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCg > 1:7446276/1‑68 (MQ=255) cTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCg > 1:22501900/1‑67 (MQ=255) cTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCg > 1:15759092/1‑67 (MQ=255) cTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCg > 1:32840502/1‑67 (MQ=255) cTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGt < 1:31210161/68‑1 (MQ=255) cTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGt < 1:2624236/68‑1 (MQ=255) cTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGt < 1:7086378/68‑1 (MQ=255) cTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGt < 1:1634791/68‑1 (MQ=255) tCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTc > 1:28676863/1‑68 (MQ=255) tCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTc < 1:19272506/68‑1 (MQ=255) cACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCa < 1:10851580/68‑1 (MQ=255) cACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCa < 1:15878472/68‑1 (MQ=255) aCGGCTAAATTGCGATGCGCTTTCATAGCCGACgcgcatcgcaatttagccgtgagtttaaacgttac > 1:11967664‑M2/1‑33 (MQ=255) aCGGCTAAATTGCGATGCGCTTTCATACCCGCCgcgcatcgcaatttagccgtgagtttaaacgttac > 1:12433526‑M2/1‑33 (MQ=255) cGGCTAAATTGCGATGCGCTTTCATAGCCGACgcgcatcgcaatttagccgtgagtttaaacgttact > 1:17739886‑M2/1‑32 (MQ=255) ggCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATgg < 1:15039106/68‑1 (MQ=255) ggCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATgg < 1:5972713/68‑1 (MQ=255) cTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCC‑TCATGCCGTCATGgat < 1:34406821/67‑1 (MQ=255) tAAATTGCGATGCGCTTTCAAAGCCGACgcgcatcgcaatttagccgtgagtttaaacgttacttcgg > 1:29601454‑M2/1‑28 (MQ=255) aaatGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:14187871/65‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:24232672/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:6903193/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:6394047/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:32024897/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:33190425/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:3670577/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:4621335/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:11178195/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:1210068/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:13670854/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:1983236/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:18978803/68‑1 (MQ=255) aaTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGgatgat < 1:18262615/68‑1 (MQ=255) aTTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGatc > 1:28322722/1‑68 (MQ=255) tGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGctca > 1:17128401/1‑67 (MQ=255) tGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGatca > 1:11532210/1‑67 (MQ=255) tGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGatca > 1:21453234/1‑67 (MQ=255) tGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGatca > 1:5076396/1‑67 (MQ=255) gaggcgcTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGatcatcat < 1:9561193/65‑1 (MQ=255) gATGCGCgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacg > 1:25091231‑M1/1‑7 (MQ=255) gATGCGCgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacg < 1:22794489‑M1/67‑61 (MQ=255) GATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGatcatcat > 1:26578535‑M1/1‑68 (MQ=255) tGCGCgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgcc < 1:21217183‑M1/67‑63 (MQ=255) tGCGCgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgcc < 1:8917438‑M1/67‑63 (MQ=255) TGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGATCATCATcc < 1:15248534‑M1/68‑1 (MQ=255) TGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGATCATCATcc < 1:13838668‑M1/68‑1 (MQ=255) gcgcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgg < 1:15409646‑M1/68‑65 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggg > 1:16614874‑M1/1‑2 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggg > 1:18127102‑M1/1‑2 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggg > 1:5366258‑M1/1‑2 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggg > 1:14829266‑M1/1‑2 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggg < 1:2178051‑M1/68‑67 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggg < 1:8201319‑M1/68‑67 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccgggg > 1:23439932‑M1/1‑2 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccggg < 1:2004126‑M1/67‑66 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccggg < 1:8478415‑M1/67‑66 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgtgagtttaaacgttacttcggtgtgacgccggg < 1:32700744‑M1/67‑66 (MQ=255) gcgtcggctatgaaagcgcatcgcaatttagccgggagtttaaacgttagttcggtgtgacgccgggg > 1:14971456‑M1/1‑2 (MQ=255) | TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAATTGCGATGCGCTTTCATAGCCGACGCGCATCGCTGCTGCGCTGGCCTTCATGCCGTCATGGATGATCATCATCCGCG > CP009273/3147645‑3147778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |