| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3375198 = | 413 (1.000) | 26 (0.070) | 7/94 | NT | 7.7% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 279 (0.800) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
Only 100 of 135 total aligned reads displayed.
CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3375273‑3375198‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG > CP009273/3375228‑3375293 CCTTTGCCGCCATCTTTTAGCTGACTATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:8152639/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCCCCTTCCAGCGCTGGCGTGATCATTTC > 1:33592424/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:2404275/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:27596676/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:32115543/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:17306372/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:15712281/1‑68 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATATCA > 1:14861331/1‑68 TTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA > 1:27917682/1‑67 taGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:21524686/66‑1 TTGCGGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:13427375/68‑1 TTGCCGCCATCTTTTAGCTGACCCTCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:10135020/68‑1 TTGCCGCCATCTTTTAGCTGACCATTGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:4587365/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCTCTGGCGTGATCATTTCAGC < 1:20003277/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:19735106/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:26873778/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:27353328/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:25112017/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:24932638/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:24875845/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:8119461/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:1994175/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:19745129/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:12993624/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:17421052/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:32215245/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:12026216/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:33767656/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:15342964/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGCGATCATTTCAGC < 1:12492884/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGATGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:19045112/68‑1 TTGCCGCCATCTATTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGGGATCATTTCAGC < 1:8563580/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCCGCGC < 1:5870788/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:11479595/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:25698299/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:5736700/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:3102635/68‑1 CCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC > 1:23693427/1‑65 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:2690586/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:33206125/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCT < 1:8722056/67‑1 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCT < 1:4249507/67‑1 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCACCGCTG > 1:20528561/1‑68 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:25925109/68‑1 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:19282086/68‑1 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:7210490/68‑1 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACATTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:14527459/1‑67 CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT < 1:27996504/68‑1 CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT < 1:34318922/68‑1 CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT < 1:4473989/68‑1 CTTTTAGCTGACCATCGCTCAACGTTGCACCTACCAGCGCTGGCGTGATCATTTCAGCGCTGTAAGGT < 1:13128507/68‑1 CTTTTAGCTGACCATCGCTCAACGTTCCACCTTCCAGCGCTGGCGTGATCATTACAGCGCTGGAAGGT < 1:27425619/68‑1 TAGCTGACCATCGCTCAACGTGGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAA < 1:27926020/68‑1 AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC < 1:25734347/68‑1 AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC < 1:10379398/68‑1 AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC < 1:11389704/68‑1 AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC < 1:15628741/68‑1 CTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTCCACCGCTGGAAGGTGCAACGT < 1:34336289/68‑1 CTGACCATCGCCCAACGTTCCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT < 1:16488134/68‑1 TGACCATCGCTCAACGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT < 1:22324127/67‑1 TGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT < 1:10751988/67‑1 TGACCATCGCGCAACGTTCCACCTGCCAGCGCTGGCGTGATAATTTCAGCGCTGGAAGGTGCAACGT < 1:17287653/67‑1 CATCGCTCAACGTTGCACCTTCCAGCGCGGGCGTGATCATTTCCGCGCTGGAAGGTGCAACGTTGAGC < 1:13763875/68‑1 cgaTGCCCCTTCCAGCGCGGGCGTGATCATTTCCCCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:18899321/65‑1 ccTTGCACCTCCCAGCGCGGGCGTGATCATTGCACCGCGGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:32131336/66‑1 CGTTGCACCTTCCCGCGCGGGCGTGAGCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:29043210/68‑1 CGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:7914915/68‑1 CGTTGCACCTTCCAGCGCTGCCGTGATCATTACCCCGCTGGAAGGTGCAACGGTGAGCGATGGTCAGC < 1:30885124/68‑1 CGTTGCACCTTCCAGCGCGGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:13521826/68‑1 CGTGGCACCTTCCAGCGCTGGCGTGAGCATTTCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:958365/68‑1 CGTGGCACCTTCCAGCGCGGGCGGGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:26488134/68‑1 gccCCTTCCCGCGCGGGCGCGAGCATCTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAA < 1:29549131/65‑1 CCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGC < 1:23904205/68‑1 gttATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTA < 1:11147476/64‑1 CAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCTAAGGTATTAAAATCGAT < 1:20989603/68‑1 tCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAA < 1:26699132/66‑1 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAGGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:13989546/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:21030046/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:9371340/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:26943766/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:10997372/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:7170102/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG < 1:6698094/68‑1 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:11770318/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:34516690/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:34503445/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:33920702/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:14996345/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:33308978/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:30649112/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:33135990/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGA < 1:5717323/66‑1 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATCAAG > 1:11485666/1‑68 GCTGGAAGGTGCAACGTAGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:13740240/1‑68 TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTT < 1:19626150/68‑1 TGGAAGGTGCAACGTTGAGCGATGGGCAGCTAAAAGATGGCCGCAAAGGTATTAAAATCGATGAAGT < 1:2220856/67‑1 GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG < 1:28402687/68‑1 GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG < 1:10074095/68‑1 GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG < 1:8772714/68‑1 GAAGGGGCAACGATGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG < 1:3924909/67‑1 CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3375273‑3375198‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG > CP009273/3375228‑3375293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |