| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3375198 = | 413 (1.000) | 26 (0.070) | 7/94 | NT | 7.7% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 279 (0.800) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
Only 100 of 526 total aligned reads displayed.
GCCTGCTGCGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGC > CP009273/3375132‑3375265 | caacttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttcc < 1:10074095‑M1/2‑1 (MQ=255) ccTGCTGCGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCa > 1:4916509/1‑68 (MQ=255) tgctgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgc < 1:28132587/68‑1 (MQ=255) tgctgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgc < 1:5992325/68‑1 (MQ=255) tgctgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgc < 1:20173248/68‑1 (MQ=255) tgctgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgc < 1:12311796/68‑1 (MQ=255) cttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCAgc > 1:11770318‑M1/64‑68 (MQ=255) cttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCAgc > 1:33920702‑M1/64‑68 (MQ=255) cttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCAgc > 1:9371340‑M1/64‑68 (MQ=255) cttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCAgc > 1:21030046‑M1/64‑68 (MQ=255) cttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCAgc > 1:14996345‑M1/64‑68 (MQ=255) cttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCAgc < 1:6698094‑M1/5‑1 (MQ=255) cttcatcgattttaatacctttgccgccatcctttagctgaccatcgctcaacgttgcaccttCCAgc > 1:13989546‑M1/64‑68 (MQ=255) ttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCaga < 1:26699132‑M1/5‑2 (MQ=255) tcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCAgc < 1:5717323‑M1/5‑1 (MQ=255) tgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgc > 1:24262350/1‑65 (MQ=255) tgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgc > 1:29923687/1‑65 (MQ=255) tgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCt < 1:21801940/68‑1 (MQ=255) gTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGa < 1:5432008/67‑1 (MQ=255) aaCGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAAt > 1:33407059/1‑68 (MQ=255) aaCGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAAt > 1:8363931/1‑68 (MQ=255) aCGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAAt > 1:31309174/1‑67 (MQ=255) ggCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGa > 1:9183930/1‑67 (MQ=255) ggCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGa > 1:15440659/1‑67 (MQ=255) ccACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGcc > 1:16655638/1‑68 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:17072386/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:21480584/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:3626400/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:7785085/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:20544336/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:6958653/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:32073387/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:28355167/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:33802924/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:32611148/68‑1 (MQ=255) ggAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGGCGTGATCATTTCAgcgc < 1:18981077/68‑1 (MQ=21) ggAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgcgc < 1:25102846/68‑1 (MQ=255) ggAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgcgc < 1:22041382/68‑1 (MQ=255) ggAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgcgc < 1:4408765/68‑1 (MQ=255) aaGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTg > 1:17742740/1‑68 (MQ=255) aaGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTg > 1:26242003/1‑68 (MQ=255) aGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTgg < 1:13713275/68‑1 (MQ=255) aaGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:19176223/1‑68 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:11030220/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:25819823/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:27884806/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:10403490/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:30453081/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:22572111/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:32981120/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:24646648/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:23178032/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:21265045/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:19767088/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:1746561/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:16444941/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:15876520/67‑1 (MQ=255) tGACGCTCGATACCCGCACCTCTTCGTCGGCCAGCGCGGAAATGATCACGCCCGCGCTGGAAGGTGCa > 1:11316328/1‑68 (MQ=255) tGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCa > 1:13871010/1‑68 (MQ=255) tGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCAGAAATGATAACGCCAGCGCTGGAAGGTGCa > 1:5185815/1‑68 (MQ=255) gACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCa > 1:23690068/1‑67 (MQ=255) gctgaccatcgctcaacgttgcaccttCCAGCGCTGAAATGATCCCGCCCGCGCTGGAAGGTGCCACg < 1:26488134‑M1/41‑1 (MQ=255) gctgaccatcgctcaacgttgcaccttCCAGCGCTGAAATGATCACGCCCGCGCTGGAAGGTGCAACg < 1:13521826‑M1/41‑1 (MQ=255) gctgaccatcgctcaacgttgcaccttCCAGCGCGGAAATGCTCACGCCAGCGCTGGAAGGTGCCACg < 1:958365‑M1/41‑1 (MQ=255) cGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAAc < 1:7422663/67‑1 (MQ=255) cGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAAc < 1:33180617/67‑1 (MQ=255) gcgcGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGt < 1:16540906/65‑1 (MQ=255) gCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGt > 1:22704036/1‑68 (MQ=255) cTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGtt > 1:28681273/1‑68 (MQ=255) cGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGa < 1:32214572/68‑1 (MQ=255) ccAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGAt > 1:11569322/1‑68 (MQ=255) ccAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGAt < 1:18632264/68‑1 (MQ=255) ccAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGAt < 1:14781212/68‑1 (MQ=255) aGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATgg > 1:23976298/1‑68 (MQ=255) aGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATgg > 1:25056750/1‑68 (MQ=255) cACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc > 1:25710568/1‑68 (MQ=255) cACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc > 1:27057438/1‑68 (MQ=255) cACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc > 1:8022263/1‑68 (MQ=255) cACCTCTTCGTCCGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc > 1:29535191/1‑68 (MQ=255) aCCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCa > 1:24400731/1‑68 (MQ=255) aCCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCa > 1:30948577/1‑68 (MQ=255) aCCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCa > 1:19547802/1‑68 (MQ=255) acgttgcaccttCCAGCGGTGGAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAg < 1:34336289‑M1/56‑1 (MQ=255) acgttgcaccttCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCa < 1:10751988‑M1/55‑1 (MQ=255) acgttgcaccttCCAGCGCTGAAATGATCACGCCAGCGCGGGAAGGTGCAACGTTGAGCGATGGTCa < 1:22324127‑M1/55‑1 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:3057544/68‑1 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:12836338/68‑1 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:12578929/68‑1 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:29707607/68‑1 (MQ=255) tctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCt > 1:11912446/1‑68 (MQ=255) gttgcaccttCCAGCGCTGCAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCt < 1:6426618‑M1/58‑1 (MQ=255) ttCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTaa > 1:22805538/1‑68 (MQ=255) ttCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTaa < 1:23446607/68‑1 (MQ=255) cgtcgGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTaaaa < 1:28938698/68‑1 (MQ=255) gtcgGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAg > 1:14415788/1‑68 (MQ=255) gtcgGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAg > 1:8861692/1‑68 (MQ=255) gtcgGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAg > 1:29100410/1‑68 (MQ=255) accttCCAGCGCTGTAATGATCACGCCAGCGCTGGAAGGTGGAACGTTGAGCGATGGTCAGCTAAAAg < 1:27425619‑M1/63‑1 (MQ=255) accttACAGCGCTGAAATGATCACGCCAGCGCTGGTAGGTGCAACGTTGAGCGATGGTCAGCTAAAAg < 1:13128507‑M1/63‑1 (MQ=255) CCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATggc < 1:3954627‑M1/68‑1 (MQ=255) | GCCTGCTGCGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGC > CP009273/3375132‑3375265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |