| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556960 = | NA (NA) | 8 (0.020) | 6/98 | NT | NA | noncoding (19/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4460278 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 134 total aligned reads displayed.
TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557033‑3556960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT < CP009273/4460278‑4460212 tgaGACGTGAACGTATTATCTGGACTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:22436965/65‑1TGCGCCGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:14956057/68‑1TGCGACGTTAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:11725700/68‑1TGCGACGTGAACGTGTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:30517639/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:20405051/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:33382474/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:17759315/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:27493736/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:270559/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:25515154/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:1917131/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:32435629/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:24358091/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:21564771/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:23811121/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:22426158/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:22440453/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:23109398/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:33918491/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:9214636/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:9103149/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:6131257/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:5067388/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:12836452/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:477021/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:4749827/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:13584185/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:13780951/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:4230412/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:3362585/68‑1TGCGACGTGAACGTCTTAACTGGCCAACACGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:2930892/68‑1TGCGACGGGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:2876508/68‑1 GCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG > 1:4436969/1‑67 GCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG > 1:8122235/1‑67 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCT < 1:3012504/68‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:24692729/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:24555148/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:8842073/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:9478872/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:10098136/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:1547683/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:10682523/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:16615512/67‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:16214245/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:7352522/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:12563961/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:6081789/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:5589909/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA > 1:13260053/1‑68 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:7738417/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:4065353/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:11179022/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:32604776/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:32174162/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:32132371/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:3038324/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:20209871/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:26281222/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:18150907/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:17920901/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTG < 1:18728598/67‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTG < 1:2785235/67‑1 CTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTAC < 1:13847432/67‑1 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTACGCTTA > 1:8793144/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTACGCTTATCAG > 1:30218304/1‑67 TACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:2865159/48‑1 ACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTG > 1:15164736/1‑68 ACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTG > 1:30622231/1‑68 AAATTCAATAAATTGCAGGAATCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCT > 1:14780410/1‑67 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAG < 1:10125664/68‑1 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAG < 1:6646085/68‑1 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAG < 1:34458692/68‑1 CCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAG > 1:6535315/1‑67 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:13154503/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:10933349/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:6270872/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:21477579/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:20345447/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:17725552/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:12625940/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:33856291/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:27170088/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:805482/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:30758526/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:3213001/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:28370173/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:10523304/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGAGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:4023162/67‑1 CTGATGCGCTACGCTTATAAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:25310934/67‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:15937820/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:23708255/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:33315525/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:32637974/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:16889493/68‑1 GATGCGCTACGCTTCTCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCAT > 1:16564041/1‑68 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT > 1:7972893/1‑68 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT > 1:8262555/1‑68 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT > 1:33305816/1‑68 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT > 1:2165287/1‑68 TGCGCTACGCTTATCAGGCCTACGTGATTACTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT > 1:4184527/1‑68 TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557033‑3556960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT < CP009273/4460278‑4460212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |