| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556960 = | NA (NA) | 8 (0.020) | 6/98 | NT | NA | noncoding (19/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4460278 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 885 total aligned reads displayed.
ATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCA > CP009273/3556893‑3557026 | aaatgccttatccggccaacaaattcaataaattgcaggaatcacgtaggcctgataagcgtagcgca > 1:2165287‑M1/68‑68 (MQ=255)aaatgccttatccggccaacaaattcaataaattgcaggaatcacgtaggcctgataagcgtagcgca > 1:8262555‑M1/68‑68 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:17336195/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:13891739/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:10720997/67‑1 (MQ=255) tgccttatccggccaacaaattcaataaattgcaggaatcacgtaggcctgataagcgtagcgcATCa < 1:23708255‑M1/4‑1 (MQ=255) ccttatccggccaacaaattcaataaattgcaggaatcacgtaggcctgataagcgtagcgcATCAg < 1:20345447‑M1/5‑1 (MQ=255) ccttatccggccaacaaattcaataaattgcaggaatcacgtaggcctgataagcgtagcgcATCAg < 1:17725552‑M1/5‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:4434011/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg > 1:32598533/1‑67 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:23536258/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:5633642/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:30225411/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:8789129/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:1627590/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:25308155/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:2579384/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:8002092/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:28506600/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACAAAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:11082866/67‑1 (MQ=255) cttatccggccaacaaattcaataaattgcaggaatcacgtaggcctgataagcgtagcgcATCAGGc < 1:3310383‑M1/7‑1 (MQ=255) cAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGcc < 1:2503232/68‑1 (MQ=255) cAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGcc < 1:33388321/68‑1 (MQ=255) cAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGcc < 1:9151200/68‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:17008914/66‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:27185052/66‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:28881918/66‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:30615845/66‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:6733368/66‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACg > 1:1260118/1‑68 (MQ=255) tttCAATCTGGCCTGAGACTAATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:15063537/67‑1 (MQ=255) cAATCTGTCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:6522417/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:5401385/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:28678468/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:26204533/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:31128135/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:3999303/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:21088710/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:20678791/68‑1 (MQ=255) aTCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGtt > 1:30833983/1‑68 (MQ=255) aTCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGtt > 1:4134331/1‑68 (MQ=255) tCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGttt > 1:27797381/1‑68 (MQ=255) tCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGttt > 1:12092159/1‑68 (MQ=255) tCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACCCTTATCAGGCCTACGTGGttt > 1:14533188/1‑68 (MQ=255) cTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTa > 1:21436362/1‑68 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGGTTTAt < 1:31717779/68‑1 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:13526912/68‑1 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:16601791/68‑1 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:15939781/68‑1 (MQ=255) ggCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATg < 1:20965751/68‑1 (MQ=255) ccTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGc < 1:6242907/67‑1 (MQ=255) cTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCaa < 1:19578593/68‑1 (MQ=255) gagaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAata < 1:22811433/68‑1 (MQ=255) agtcTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:29047598/65‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGtt < 1:18029598/57‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:28275946/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:2940005/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:11712592/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:942294/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:18665132/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:17527251/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:22097959/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:32022855/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:4653258/67‑1 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:18436955/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:25569351/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:24599828/1‑68 (MQ=255) cTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata < 1:23235960/66‑1 (MQ=255) gatgaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGa < 1:19262867/68‑1 (MQ=255) gatgaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGa < 1:12506410/68‑1 (MQ=255) gaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAtt > 1:24180787/1‑68 (MQ=255) cAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTg < 1:15827172/68‑1 (MQ=255) cAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTg < 1:12755442/68‑1 (MQ=255) cacaAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:33794882/54‑1 (MQ=255) acaAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATgg < 1:5220576/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATTGt < 1:1308305/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:6886799/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:7754821/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:10478911/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:34453205/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:19005295/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:19967306/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:22480264/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:29848228/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:32793322/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:34133306/68‑1 (MQ=255) aaaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTc < 1:13794540/68‑1 (MQ=255) aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAGTATATTGAATTTGCATGGTCtt < 1:13286528/68‑1 (MQ=255) aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCtt < 1:3674698/68‑1 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTTCGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAg < 1:7236050/68‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAg < 1:32297934/67‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAg < 1:18186951/67‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGa < 1:9787752/68‑1 (MQ=255) gcgcTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGAt < 1:10106004/68‑1 (MQ=255) gCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGt > 1:4882654/1‑68 (MQ=255) gCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGt > 1:26882261/1‑68 (MQ=255) gCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGt < 1:14264822/68‑1 (MQ=255) gCTTATCAGGCCTACGTGGTGTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATTAGACGt > 1:28042434/1‑68 (MQ=255) cTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGt > 1:27425904/1‑67 (MQ=255) ttATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTc > 1:15522067/1‑68 (MQ=255) | ATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCA > CP009273/3556893‑3557026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |