| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556960 = | NA (NA) | 8 (0.020) | 6/98 | NT | NA | noncoding (19/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4460278 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 513 total aligned reads displayed.
AAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATT > CP009273/4460212‑4460345 | tGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatca < 1:23708255‑M2/68‑5 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCTCGTAGGCCTGATAAGCGTAGCGCatcag < 1:4023162‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTTATAAGCGTAGCGCatcag < 1:25310934‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:2741863‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:10523304‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:21477579‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:28370173‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:12625940‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:33856291‑M2/67‑6 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCatcag < 1:14405677‑M2/67‑6 (MQ=255) ttATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCg < 1:16738726/68‑1 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGAAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt > 1:24377560/1‑68 (MQ=255) ccGGCCAACAAATTCATTAAATTGCAGGAATCACGTAGGCCAGATAAGCGTAGAGCATCAGGCTAttt > 1:23885383/1‑68 (MQ=18) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:13951472/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:1903967/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:19789539/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:27223243/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:2185143/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:10799490/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:6489840/1‑68 (MQ=255) ccAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGCTAAGCGTAGCGCATCAGGCGATTTTGCg > 1:26707813/1‑68 (MQ=255) ccAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGc < 1:9238525/67‑1 (MQ=255) ccAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGc < 1:11518404/67‑1 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc < 1:30986999/68‑1 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc < 1:3020122/68‑1 (MQ=255) tCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtcatc > 1:28946062/1‑68 (MQ=255) tCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtcatc > 1:28050318/1‑68 (MQ=255) cAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtcatca > 1:8935907/1‑68 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATTAGGGTAGCGCTTCAGGGGATTTTGCGTTTGTCATCAGa < 1:28735064/68‑1 (MQ=18) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:22144817/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:5624621/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:30288473/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:17255726/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:26596274/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:31967752/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:1546198/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:740642/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:1496435/68‑1 (MQ=255) tAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGAc < 1:33336956/68‑1 (MQ=255) aaaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACt > 1:12315983/1‑68 (MQ=255) aaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACtt > 1:29704704/1‑68 (MQ=255) tGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAt < 1:2686473/68‑1 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCatcaggcctacgtgattcctgcaatttattgaattt > 1:14780410‑M2/1‑31 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCg > 1:9497898/1‑68 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCg > 1:21192081/1‑68 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCg > 1:19875123/1‑68 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCg > 1:31784091/1‑68 (MQ=255) ggAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg > 1:11903077/1‑68 (MQ=255) aaTCACGTAGGCCTTATACTCGTAGCGCATAAGTCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:26234790/66‑1 (MQ=21) aaTCACGTAGGCCTTATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:22762029/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCTTCAGACTTAATCCgg < 1:3616833/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:28514911/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:31501606/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:7840066/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:10151910/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:25869066/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:23289053/66‑1 (MQ=255) cACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAGCCGGGCATg < 1:15206139/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:32458006/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:14181990/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:17854966/1‑68 (MQ=255) tAGGCCTGATAAGGGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:16319350/1‑67 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGc > 1:18682208/1‑67 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGccc > 1:15855013/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGccc > 1:30668902/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGccc < 1:16940699/67‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:27728870/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCg > 1:3045816/1‑68 (MQ=255) cTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCgg > 1:34376513/1‑68 (MQ=255) cTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCgg > 1:5806182/1‑68 (MQ=255) tGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGa < 1:491633/68‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGa > 1:33209108/1‑68 (MQ=255) tGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGa < 1:4358528/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:17641396/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:6651450/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:8439984/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAtt > 1:15634951/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATCATAGCCCGGAtt > 1:13119274/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTAATCAGACTTAATCCGGGAATGATAGCCCGGAttt > 1:2632298/1‑68 (MQ=255) aaatCGTAGCGCaacaggcctacgtgttttatgcaatatattgaaattgcatggtcttgtaggccaga > 1:8001312‑M2/2‑12 (MQ=255) aaGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTc < 1:9815416/68‑1 (MQ=255) aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTcc > 1:34136998/1‑68 (MQ=255) aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTcc > 1:5339785/1‑68 (MQ=255) ggaGCGGATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCa < 1:10017510/64‑1 (MQ=255) gTAGCGCatcaggcctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataag < 1:13847432‑M2/67‑61 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:16010863/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:20403798/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:7173325/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:13528984/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATc > 1:24031821/1‑68 (MQ=255) gTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTACATc > 1:22408556/1‑68 (MQ=255) aGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCaa > 1:32954190/1‑68 (MQ=255) cgcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGa > 1:31172134/1‑68 (MQ=255) cgcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGa > 1:11034968/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGa < 1:11310740/67‑1 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:28128645/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:8152006/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:29287007/1‑68 (MQ=255) gcATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAt > 1:18199840/1‑68 (MQ=255) cATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGAtt > 1:33635697/1‑68 (MQ=255) | AAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATT > CP009273/4460212‑4460345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |