| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4170893 = | 292 (0.700) | 17 (0.050) | 7/90 | NT | 6.1% | intergenic (+40/‑280) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit |
| ? | CP009273 | 4170919 = | 287 (0.860) | intergenic (+66/‑254) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit | |||||
Only 100 of 515 total aligned reads displayed.
AGCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGA > CP009273/4170826‑4170960 | caagcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaag < 1:5401219‑M1/1‑1 (MQ=255)caagcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaag < 1:22636978‑M1/1‑1 (MQ=255)caagcattgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaag < 1:8329931‑M1/1‑1 (MQ=255) gCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATg > 1:3842758/1‑67 (MQ=255) gCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATg > 1:14912495/1‑67 (MQ=255) gCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATg > 1:1292890/1‑67 (MQ=255) tGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGc < 1:19293623/67‑1 (MQ=255) tGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGc < 1:19069964/67‑1 (MQ=255) tGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGc < 1:3955007/67‑1 (MQ=255) attgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTgg < 1:33476665‑M1/6‑1 (MQ=255) attgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTgg < 1:481756‑M1/6‑1 (MQ=255) attgaaaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTgg < 1:7258598‑M1/6‑1 (MQ=255) cgcTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGt > 1:31535673/1‑68 (MQ=255) tgaaaggcacagcagtagtcaaacagtgtgaaacgctaccggcgccttacagcgcaaaaaGGCTGGTg > 1:26119164‑M1/61‑68 (MQ=255) gcTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTg > 1:21702175/1‑68 (MQ=255) tgaagttgaagtTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGAc < 1:10512329/68‑1 (MQ=255) tgaagttgaagtTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGAc < 1:17791696/68‑1 (MQ=255) gaagttgaagttAAATACGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACt < 1:22236950/68‑1 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGAc > 1:25344610‑M1/58‑67 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGAc > 1:14525713‑M1/58‑67 (MQ=255) aaggcacagcagtagtcaaacagtgtgaaacgctactggcgccttacagcgcaaaaaGGCTGGTGAc > 1:8729021‑M1/58‑67 (MQ=255) aagttgaagttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACtt > 1:12346784/1‑68 (MQ=255) agttgaagttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACtt < 1:1109722/67‑1 (MQ=255) gaagttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAg < 1:9388978/68‑1 (MQ=255) agttAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTc < 1:21209814/68‑1 (MQ=255) aaTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCa > 1:23611959/1‑67 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:26601782/68‑1 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:1311017/68‑1 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:23952880/68‑1 (MQ=255) aTAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGc < 1:14249421/68‑1 (MQ=255) tacgCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCGGAGGGCTGGTGACTTTTTAGTCACCAGcc < 1:30097810/65‑1 (MQ=255) tAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGcc < 1:13971285/68‑1 (MQ=255) aGCCACCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtt < 1:30740449/68‑1 (MQ=255) aGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtt < 1:30290465/68‑1 (MQ=255) aGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtt < 1:27967207/68‑1 (MQ=255) aGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtt < 1:24670490/68‑1 (MQ=255) aGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtt < 1:16807300/68‑1 (MQ=255) gCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCttt > 1:27002173/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:27631315/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:6595504/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:10899436/1‑68 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:9059626/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:29008630/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:20509710/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:11262222/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCGGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:31927967/68‑1 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATTTCTTGTGACTTTTTAGTCACCATCCTTTTTgcgc < 1:4158139/68‑1 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:1143026/1‑66 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:15987796/1‑66 (MQ=255) cTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCt < 1:16481041/68‑1 (MQ=255) cTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTAAAAAGTCACCAGCCTTTTTGCGCt < 1:17610105/68‑1 (MQ=37) tCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGt < 1:29975647/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:24434380/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:4327539/68‑1 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAgg < 1:16229216/67‑1 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgc > 1:6512719/1‑68 (MQ=255) gCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg > 1:23278462/1‑67 (MQ=255) aGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGcc < 1:22378611/67‑1 (MQ=255) gCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAg > 1:34399923/1‑68 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGt > 1:7913551/1‑68 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGt > 1:19525159/1‑68 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGt > 1:7562737/1‑68 (MQ=255) cgccttacagcgcaaaaaGGCTGGTGGCTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTa < 1:23779725‑M1/50‑1 (MQ=255) gagaAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGc < 1:33856209/68‑1 (MQ=255) gagaAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGc < 1:34199459/68‑1 (MQ=255) gagaAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGc < 1:10026137/68‑1 (MQ=255) aaaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGtt > 1:17475610/1‑68 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:5093145/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:3112238/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:9859409/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:13564002/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:7318420/66‑1 (MQ=255) gCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTcac > 1:153809/1‑65 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTcac > 1:3623999/1‑64 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:27084751/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:27292444/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:1970334/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:27373225/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:1188612/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:44345/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:29535230/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:6069629/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:6846677/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:10365187/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:32809360/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:32114156/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:21997631/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:1888350/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:1820084/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:5584237/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:31002765/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:28298945/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:26220714/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:12534675/68‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:15691930‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:32235916‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:25648309‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:18430330‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:1327011‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:9576826‑M1/1‑68 (MQ=255) | AGCTGGCGCTGAAGTTGAAGTTAAATAAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGA > CP009273/4170826‑4170960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |