| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4170893 = | 292 (0.700) | 17 (0.050) | 7/90 | NT | 6.1% | intergenic (+40/‑280) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit |
| ? | CP009273 | 4170919 = | 287 (0.860) | intergenic (+66/‑254) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit | |||||
Only 100 of 507 total aligned reads displayed.
AAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGT > CP009273/4170852‑4170986 | aGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtt < 1:34281647/68‑1 (MQ=255) aGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtt < 1:33859653/68‑1 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGGTGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:14981233/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:18272241/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:24375956/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:31825285/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:27631315/1‑68 (MQ=255) ccAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCtttt > 1:27296892/1‑68 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:17537072/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:4182512/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:16656807/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:32651435/68‑1 (MQ=255) aCCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:15422719/68‑1 (MQ=255) aCCCTTCCGGGTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc < 1:27006895/68‑1 (MQ=255) cccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:6263038/1‑67 (MQ=255) gtgaaacgctactggcgccttacagcgcaaaaaggctggtcactaaaacgtcaccagccTTTTTgc < 1:14571855‑M2/7‑1 (MQ=255) gtgaaacgctactggcgcctaacagcgcaaaaaggctggggactaaaaagtcaccagccTTTTTgc < 1:19604252‑M2/7‑1 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCttttgc > 1:33327414/1‑63 (MQ=255) ccTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:19476430/1‑66 (MQ=255) cTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCt < 1:31057550/68‑1 (MQ=255) cTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCt < 1:16096063/68‑1 (MQ=255) cTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCt < 1:5502063/68‑1 (MQ=255) cTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCt < 1:21085275/68‑1 (MQ=255) ttCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTgc > 1:12058701/1‑64 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:7471862/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:29208804/68‑1 (MQ=255) ccGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTa < 1:8090220/68‑1 (MQ=255) aacgctactggcgccttacagcgcaaaaaggctggtgactaaaaagtcaccagccTTTTTGCGCTGTa < 1:7682645‑M2/13‑1 (MQ=255) acgctactggcgccttacagcgcaaaaaGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCgctgaag < 1:30077145‑M1/40‑4 (MQ=255) ggTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAg > 1:26559619/1‑68 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAgg < 1:23858872/67‑1 (MQ=255) ttGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAgg < 1:12745177/67‑1 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg < 1:18591784/68‑1 (MQ=255) tGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGgcg < 1:17765462/68‑1 (MQ=255) aGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGcc < 1:22378611/67‑1 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGt > 1:14047017/1‑68 (MQ=255) ccTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGt > 1:34180106/1‑68 (MQ=255) cgccttacagcgcaaaaaGGCTGGTGGCTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTa < 1:23779725‑M1/50‑1 (MQ=255) cgccttaaagcgcaaaaaGGCTGGTGACTTTTTTGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTa < 1:927542‑M1/50‑1 (MQ=255) gagaAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGc < 1:10026137/68‑1 (MQ=255) ttacagcgcaaaacggctggtgactaaaaagtcaccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:7296917‑M2/28‑1 (MQ=255) gaAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt > 1:70859/1‑68 (MQ=255) tacagcgcaaaaaGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTTAGGCGCCAGTGGCGtt < 1:11637901‑M1/55‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:21960014/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:13564002/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:24654486/66‑1 (MQ=255) aaTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGt < 1:4381557/66‑1 (MQ=255) aTCAGGCTGATGGCTGGTGACTTTTTCGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTc < 1:12370742/68‑1 (MQ=255) aTCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTc > 1:15978038/1‑68 (MQ=255) gcaaaaaGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTcac < 1:8798071‑M1/59‑1 (MQ=255) gCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTcac > 1:2807871/1‑65 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:25587675/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:1428557/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:3222745/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:17058397/67‑1 (MQ=255) cTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACt < 1:10912963/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:23306917/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:28479999/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:31157954/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:3739931/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTg < 1:6069629/67‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt > 1:11276013/1‑68 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:10365187/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:3598001/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:29573596/68‑1 (MQ=255) tGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGt < 1:1888350/68‑1 (MQ=255) gATGGCTGGTGACTTTTTCGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:27138956/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:17605183/68‑1 (MQ=255) gATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGtt < 1:4700276/68‑1 (MQ=255) tGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:8658206/68‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:15691930‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:5090878‑M1/67‑1 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:30761898‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:9576826‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:1327011‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:10702729‑M1/1‑68 (MQ=255) GGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGa > 1:6551852‑M1/1‑68 (MQ=255) GCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCg < 1:25826389‑M1/52‑1 (MQ=255) GCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTg < 1:6740671‑M1/66‑1 (MQ=255) TGGTGACTTTTTCGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGact > 1:30390042‑M1/1‑67 (MQ=255) TGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGact < 1:11137940‑M1/67‑1 (MQ=255) TGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGact > 1:26168140‑M1/1‑67 (MQ=255) TGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGactact > 1:20234513‑M1/1‑67 (MQ=255) TGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGactact > 1:2282980‑M1/1‑67 (MQ=255) tttAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGc < 1:22227866/68‑1 (MQ=255) tAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCt > 1:2626864/1‑68 (MQ=255) tAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCt > 1:30147635/1‑68 (MQ=255) agtcaccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCtt < 1:16334577‑M2/57‑1 (MQ=255) caccagccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTc < 1:12506789‑M2/59‑1 (MQ=255) acagccTTTTTGCGCTGTAAGTCGCCATTAGCGTTTAACACTGTTTGACTACTGCTGTGCCTTTCAAt < 1:19258296‑M2/62‑1 (MQ=255) ccTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCtt > 1:27462609‑M2/3‑68 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGc < 1:400332‑M2/64‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGc < 1:32005179‑M2/64‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTg < 1:5401219‑M2/67‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTg < 1:25227998‑M2/67‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTg < 1:22636978‑M2/67‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTg < 1:8329931‑M2/67‑1 (MQ=255) cTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTg < 1:13014819‑M2/67‑1 (MQ=255) tttttGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGt < 1:9865723/68‑1 (MQ=255) tttttGCGCTGTAAGGCGCCAGGAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGt > 1:9060370/1‑68 (MQ=255) | AAGCCAACCCTTCCGGTTGCAGCCTGAGAAATCAGGCTGATGGCTGGTGACTTTTTAGTCACCAGCCTTTTTGCGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGT > CP009273/4170852‑4170986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |