| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4586926 = | NA (NA) | 6 (0.020) | 4/88 | NT | NA | noncoding (13/39 nt) | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4586955 = | NA (NA) | intergenic (+126/+12) | yjjN/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferases I and II | |||||
Only 100 of 659 total aligned reads displayed.
GCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAAT > CP009273/4586859‑4586993 | gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:5928524‑M1/68‑68 (MQ=255)gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:4596783‑M1/68‑68 (MQ=255)gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:33234392‑M1/68‑68 (MQ=255)gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:31875525‑M1/68‑68 (MQ=255)gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:28995697‑M1/68‑68 (MQ=255) cgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgt < 1:25957900‑M1/2‑1 (MQ=255) gtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgt > 1:7619410‑M1/66‑67 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCg < 1:12626602/66‑1 (MQ=255) ccGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTa > 1:5060986/1‑68 (MQ=255) cGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAg < 1:10655016/68‑1 (MQ=255) agctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAg > 1:18620897‑M1/63‑68 (MQ=255) ggggAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAgg < 1:1928655/68‑1 (MQ=255) gggAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAgg > 1:4813742/1‑67 (MQ=255) ctagggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAgg < 1:13954869‑M1/7‑1 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:29531248‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:6580941‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:1749543‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGTc < 1:8615407‑M1/9‑1 (MQ=255) gAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTc > 1:26712241/1‑67 (MQ=255) cgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGTCg > 1:24105339‑M1/59‑68 (MQ=255) aGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCa < 1:8059945/68‑1 (MQ=255) aGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGACGTAGAAGGCGTGTAGGTCGc > 1:14592381/1‑67 (MQ=255) gatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGTCGCa > 1:6265488‑M1/56‑67 (MQ=255) gatcggcatggtggaaattaaagtggtagaacgtgaagggtaatacctgactgatGTGTAGGTCGCa > 1:18334864‑M1/56‑67 (MQ=255) gtTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAcc < 1:18962087/67‑1 (MQ=255) gtTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAcc < 1:33082830/67‑1 (MQ=255) gtTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAcc < 1:5193492/67‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGACGGCGTGTAGGTCGCACCCTa < 1:4029945/68‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:5533091/67‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:19804361/67‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:32405612/67‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:29988133/67‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTa > 1:22598163/1‑68 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTa > 1:23884729/1‑68 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTa > 1:24993178/1‑68 (MQ=255) gcgcTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGc > 1:26303097/1‑68 (MQ=255) gcTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCg > 1:23613691/1‑67 (MQ=255) gcTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:17940396/68‑1 (MQ=255) tGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAcc < 1:27131586/68‑1 (MQ=255) tGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:29853215/67‑1 (MQ=255) tGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:25382137/67‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:12357052/68‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:13079846/68‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:25754980/68‑1 (MQ=255) tttttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTac < 1:6940421/68‑1 (MQ=255) ttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTAcaca < 1:21169201/68‑1 (MQ=255) ttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTAcaca < 1:33680107/68‑1 (MQ=255) ttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTAcaca < 1:1003459/68‑1 (MQ=255) gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag < 1:17751727/68‑1 (MQ=255) gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag < 1:34346439/68‑1 (MQ=255) gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag < 1:20182030/68‑1 (MQ=255) gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag < 1:23350901/68‑1 (MQ=255) gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag < 1:22096527/68‑1 (MQ=255) ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt < 1:11588253/67‑1 (MQ=255) ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt < 1:2760972/67‑1 (MQ=255) ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt < 1:1204715/67‑1 (MQ=255) ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt < 1:17169946/67‑1 (MQ=255) taataaTGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGa < 1:30461289/68‑1 (MQ=255) aataatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGaa > 1:20710387/1‑68 (MQ=255) aatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt > 1:32784498/1‑67 (MQ=255) aatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt > 1:14986860/1‑67 (MQ=255) aatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt > 1:21731271/1‑67 (MQ=255) atGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAc < 1:4247851/68‑1 (MQ=255) gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAc > 1:16791991/1‑66 (MQ=255) gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAc > 1:24734749/1‑66 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt > 1:21493313/1‑67 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt > 1:3857330/1‑67 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTACGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt > 1:27795534/1‑67 (MQ=255) tgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTc > 1:16367337/1‑67 (MQ=255) tgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTc > 1:20538258/1‑67 (MQ=255) gtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCAc < 1:19904805/68‑1 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACg < 1:13470751/67‑1 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:30782473/1‑68 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:21011784/1‑68 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:10992081/1‑68 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCACGAATTACCCTTCACGt > 1:24535918/1‑68 (MQ=255) aGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGtt < 1:9202269/68‑1 (MQ=255) aGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGtt < 1:29229718/68‑1 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGCCCTACACATCAGTCAGGAATTACCCTTCACGt > 1:6440000/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:19467798/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:31730584/1‑66 (MQ=255) ccGTAGAACGCGTGTAGGTCGCACCCTATGCGACCGACACATCAGTCAGGAATTACCCTTCACGTTCt > 1:33965770/1‑68 (MQ=255) ctgatGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:9683462‑M1/63‑1 (MQ=255) ctgatGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:7978317‑M1/63‑1 (MQ=255) ctgatGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:15568369‑M1/63‑1 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGCCCAACCCATGCGACAGGAAATACCCTTAACGTTCTAcccca > 1:33584062/1‑65 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACCCATCAGTCAGGGATTACCCTTCACGTTCTACCACt > 1:8333590/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:309397/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:28757690/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:281798/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:26975723/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:23013246/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:8472783/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:34084903/1‑68 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACtt > 1:15943357/1‑68 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:27352655/67‑1 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:7194373/67‑1 (MQ=255) gCGTGTAGGTCGCCCCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTa > 1:31283639/1‑68 (MQ=255) gCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTa > 1:22350249/1‑68 (MQ=255) cGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTaa > 1:14227500/1‑68 (MQ=255) | GCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAAT > CP009273/4586859‑4586993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |