New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4586926 =NA (NA)6 (0.020) 4/88 NT NA noncoding (13/39 nt) REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences
?CP009273 4586955 = NA (NA)intergenic (+126/+12) yjjN/opgB L‑galactonate oxidoreductase/phosphoglycerol transferases I and II

Only 100 of 552 total aligned reads displayed.

TTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTACGCG  >  CP009273/4586888‑4587022
                                                                   |                                                                   
ttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTAcaca                                                                     <  1:1003459/68‑1 (MQ=255)
  ttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtc                                                                   <  1:5079258/68‑1 (MQ=255)
  ttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtc                                                                   >  1:33196260/1‑68 (MQ=255)
  ttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtc                                                                   >  1:3135386/1‑68 (MQ=255)
  ttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtc                                                                   >  1:27192283/1‑68 (MQ=255)
  ttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtc                                                                   >  1:26952191/1‑68 (MQ=255)
  ttGTTTCTTAATAATGTGTTGTAAACCGCAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtc                                                                   >  1:16076426/1‑68 (MQ=255)
    gTTTCTTAATAATGTGTTGTCAGCCGTAGAAGGCGTGTAGGGCGCACCCTATGCGACCTACACAtcag                                                                 <  1:20835733/68‑1 (MQ=255)
    gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag                                                                 <  1:17751727/68‑1 (MQ=255)
    agtggtagaacgtgaagggtaattcctgactgatgtgtaggtcgcatagggtgcgacctacacAtcag                                                                 <  1:9683462‑M2/5‑1 (MQ=255)
      ttCTTAATAATGTGTTGTAAGCCGTCGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt                                                                <  1:4245067/67‑1 (MQ=255)
      ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt                                                                <  1:6443129/67‑1 (MQ=255)
      ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt                                                                <  1:1377966/67‑1 (MQ=255)
      ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt                                                                <  1:23852647/67‑1 (MQ=255)
          taataaTGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGa                                                           <  1:26838296/68‑1 (MQ=255)
          taataaTGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGa                                                           <  1:15294193/68‑1 (MQ=255)
          agaacgtgaagggtaattcctgactgatgtgtaggtcgcatagggtgcgacctacacATCAGTCAGGa                                                           <  1:7653659‑M2/11‑1 (MQ=255)
           aataatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCGACACATCAGTCAGGaa                                                          >  1:30686314/1‑68 (MQ=255)
            ataatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACTCATCAGTCAGGAAt                                                         >  1:12232134/1‑68 (MQ=255)
              aatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt                                                        >  1:29302344/1‑67 (MQ=255)
              aatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt                                                        >  1:32784498/1‑67 (MQ=255)
              aatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt                                                        >  1:24905549/1‑67 (MQ=255)
              aatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt                                                        >  1:22696984/1‑67 (MQ=255)
               atGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCGTATGCGACCTACACATCAGTCAGGATTTAc                                                      <  1:21639018/68‑1 (MQ=255)
               atGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTa                                                       >  1:15666612/1‑67 (MQ=255)
                tgtgTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAcc                                                     <  1:8305593/68‑1 (MQ=255)
                 gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAc                                                      >  1:16791991/1‑66 (MQ=255)
                 gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAc                                                      >  1:4682548/1‑66 (MQ=255)
                   gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt                                                   >  1:3857330/1‑67 (MQ=255)
                   aggggaattcctcactgatgtgtaggtcgcatagggtgcgacctacacATCAGTCAGGAATTACCCtt                                                  <  1:33353818‑M2/20‑1 (MQ=255)
                     tgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTc                                                 >  1:20355027/1‑67 (MQ=255)
                     tgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTc                                                 >  1:20538258/1‑67 (MQ=255)
                      gtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCAc                                               <  1:19904805/68‑1 (MQ=255)
                        aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACg                                              <  1:1185465/67‑1 (MQ=255)
                        aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACg                                              <  1:8002922/67‑1 (MQ=255)
                        aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:2550608/1‑68 (MQ=255)
                         aGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGtt                                            <  1:669726/68‑1 (MQ=255)
                         aGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGtt                                            <  1:9202269/68‑1 (MQ=255)
                         aGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGtt                                            <  1:18984677/68‑1 (MQ=255)
                          gCCGTAGAAGGTGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:10917328/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACCTCAGTCAGGAATTACCCTTCACGt                                             >  1:7053415/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:14803821/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:12874203/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:140372/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:31730584/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:18032195/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:20006879/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:7223279/1‑66 (MQ=255)
                          gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt                                             >  1:5346829/1‑66 (MQ=255)
                           ccGTAGAACGCGTGTAGGTCGCACCCTATGCGACCGACACATCAGTCAGGAATTACCCTTCACGTTCt                                          >  1:33965770/1‑68 (MQ=255)
                                 aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt                                    >  1:2443078/1‑68 (MQ=255)
                                 aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt                                    >  1:19307365/1‑68 (MQ=255)
                                 aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTGCACGTTCTACCACt                                    >  1:10529037/1‑68 (MQ=255)
                                  aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACtt                                   >  1:32689839/1‑68 (MQ=255)
                                  aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt                                    <  1:4590455/67‑1 (MQ=255)
                                  aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt                                    <  1:23253652/67‑1 (MQ=255)
                                  aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt                                    <  1:27352655/67‑1 (MQ=255)
                                  aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt                                    <  1:30378908/67‑1 (MQ=255)
                                    gCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTa                                 >  1:28249991/1‑68 (MQ=255)
                                    gCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTa                                 >  1:14310558/1‑68 (MQ=255)
                                    gCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTa                                 >  1:22350249/1‑68 (MQ=255)
                                    gCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTa                                 >  1:84856/1‑68 (MQ=255)
                                     cGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTaa                                >  1:25951920/1‑68 (MQ=255)
                                     cGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCGTCACGTTCTACCACTTTaa                                >  1:17555124/1‑68 (MQ=255)
                                      GTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTaa                                >  1:12550233‑M1/1‑67 (MQ=255)
                                        GTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAAtt                              <  1:11416625‑M1/67‑1 (MQ=255)
                                          AGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTcc                           <  1:7971372‑M1/68‑1 (MQ=255)
                                          AGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCGTCACGTTCTACCACTTTAATTTcc                           <  1:28825415‑M1/68‑1 (MQ=255)
                                          AGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACACTTCACGTTCTACCACTTTAATTTcc                           >  1:8548543‑M1/1‑68 (MQ=255)
                                            GTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTcca                          <  1:27865046‑M1/67‑1 (MQ=255)
                                            GTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTGTAATTTcca                          <  1:13343079‑M1/67‑1 (MQ=255)
                                            GTCGCACCCTATGCGACCTACACATCAGTAAGGAATTACCCTTCACGTTCTACCACTTTAATTTcca                          <  1:19604014‑M1/67‑1 (MQ=255)
                                             TCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTccacc                        <  1:2136139‑M1/68‑1 (MQ=255)
                                             TCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTccacc                        <  1:22108659‑M1/68‑1 (MQ=255)
                                             TCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTccac                         >  1:26539665‑M1/1‑67 (MQ=255)
                                                 ACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATg                     >  1:25007096‑M1/1‑67 (MQ=255)
                                                  cccTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGcc                   >  1:18625170/1‑68 (MQ=255)
                                                   ccTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCg                  >  1:27668451/1‑68 (MQ=255)
                                                      aTGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATc               <  1:33236722/68‑1 (MQ=255)
                                                      aTGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATc               <  1:34493547/68‑1 (MQ=255)
                                                       tgcgacctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATc               >  1:29942564‑M2/13‑67 (MQ=255)
                                                         cgacctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCg            >  1:34131572‑M2/11‑68 (MQ=255)
                                                         cgacctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCg            >  1:24105339‑M2/11‑68 (MQ=255)
                                                         cgacctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCg            >  1:29607019‑M2/11‑68 (MQ=255)
                                                          gacctacacATCAGTCAGGAATTACCCTTCACGTTCTACAAATTTAATTTCCACCATGCCGATCCCGa           <  1:33670955‑M2/59‑1 (MQ=255)
                                                           acctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGa           >  1:235764‑M2/9‑67 (MQ=255)
                                                           acctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGa           >  1:19755360‑M2/9‑67 (MQ=255)
                                                           acctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGa           >  1:26142536‑M2/9‑67 (MQ=255)
                                                           acctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGa           >  1:30931325‑M2/9‑67 (MQ=255)
                                                           acctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGa           >  1:30181144‑M2/9‑67 (MQ=255)
                                                           acctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACAATGCCGATACCGa           >  1:6175440‑M2/9‑67 (MQ=255)
                                                            cctacacATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAg          <  1:9483481‑M2/60‑1 (MQ=255)
                                                             ctacacATCAGGCATGAATTACCATTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCt        <  1:5978549‑M2/62‑1 (MQ=255)
                                                                  cATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTAcgc   >  1:4093065‑M2/2‑68 (MQ=255)
                                                                  cATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTAcgc   >  1:28995697‑M2/2‑68 (MQ=255)
                                                                  cATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTAcgc   >  1:18309972‑M2/2‑68 (MQ=255)
                                                                  cATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTAcgc   >  1:31875525‑M2/2‑68 (MQ=255)
                                                                  cATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTAcgc   >  1:20679302‑M2/2‑68 (MQ=255)
                                                                  cATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTAcgc   >  1:24549956‑M2/2‑68 (MQ=255)
                                                                   aTCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTAcgcg  >  1:17199261/1‑68 (MQ=255)
                                                                   |                                                                   
TTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAATTTCCACCATGCCGATCCCGAGCTTACGCG  >  CP009273/4586888‑4587022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.