| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1240767 = | 360 (0.870) | 42 (0.120) | 21/96 | NT | 11.6% | coding (152/441 nt) | ycgY | uncharacterized protein |
| ? | CP009273 | = 1302830 | 333 (0.940) | coding (73/1461 nt) | clsA | cardiolipin synthase 1 | |||||
Only 100 of 558 total aligned reads displayed.
ATTGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGATTAT > CP009273/1240700‑1240834 | gaatgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaa < 1:6530676‑M1/1‑1 (MQ=255) ttGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAg < 1:11141747/68‑1 (MQ=255) ttGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAg > 1:29504251/1‑68 (MQ=255) tGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGt > 1:27464167/1‑68 (MQ=255) tGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGt < 1:18337191/68‑1 (MQ=255) tGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGt > 1:3494587/1‑68 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaa > 1:3199388‑M1/66‑66 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:31135969‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:2145003‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGt > 1:10378657‑M1/66‑68 (MQ=255) gtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGtt < 1:30576280‑M1/4‑1 (MQ=255) aaCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGtt > 1:8005631/1‑67 (MQ=255) aaCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGtt > 1:8873812/1‑67 (MQ=255) cATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTAcg < 1:30817792/68‑1 (MQ=255) cATTTAGAATTGATCAATCCTTCAGGCAGTTTAAGCCAAAATACCCGATCGGCAATGCTTCAGTTAc > 1:32283286/1‑67 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:19208423‑M1/62‑68 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcgc < 1:28707492‑M1/8‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcgc < 1:23567185‑M1/8‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:22995670‑M1/7‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:1312990‑M1/7‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:13925353‑M1/7‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:9331064‑M1/7‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:18544980‑M1/7‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:20149736‑M1/7‑1 (MQ=255) aTTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTAcgc > 1:15069919/1‑68 (MQ=255) aTTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTAcgc > 1:25671393/1‑68 (MQ=255) ataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:26236259‑M1/7‑1 (MQ=255) ataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:50762‑M1/7‑1 (MQ=255) ttAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGa < 1:30122304/68‑1 (MQ=255) taatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:12373878‑M1/7‑1 (MQ=255) taatcaacagccaggccatcgcggagggaactgcgagtcgtttcattagaatgcgtaaAGTTAcg < 1:30375144‑M1/7‑1 (MQ=255) tAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGaa < 1:27214259/68‑1 (MQ=255) tAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGaa < 1:5900961/68‑1 (MQ=255) tAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGaa < 1:20579761/68‑1 (MQ=255) aaTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAagag > 1:32478684/1‑68 (MQ=255) aacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTACGCGAAGAgg < 1:4793547‑M1/15‑1 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAaga < 1:16387297/66‑1 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAaga < 1:10916885/66‑1 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:27846383/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg < 1:15317021/68‑1 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg < 1:33574944/68‑1 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg < 1:6285320/68‑1 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:2540148/1‑68 (MQ=255) ttGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGa > 1:10683133/1‑68 (MQ=255) aTCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATg > 1:25842814/1‑68 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg < 1:29797825/68‑1 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg > 1:24996536/1‑68 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg > 1:13766424/1‑68 (MQ=255) ccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTACGCGAAGAGGAATGGTc > 1:24666592‑M1/44‑65 (MQ=255) ccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTACGCGAAGAGGAATGGTCTGa < 1:16184766‑M1/25‑1 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:19789802/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:11980602/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:21839207/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:13335449/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:5527029/1‑68 (MQ=255) cTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGaa > 1:1000873/1‑68 (MQ=255) tGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑t > 1:9725847/1‑68 (MQ=255) ggCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑tt > 1:3145855/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑ttt > 1:16776125/1‑68 (MQ=255) cAGTTTAAGCCAATATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATTGTCTGAATTC‑ttt < 1:17657052/67‑1 (MQ=255) aGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGtt < 1:6780909/68‑1 (MQ=255) gcgcgtcgtttaattagaatgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTA‑TTTTATTGGtt < 1:835085‑M1/40‑1 (MQ=255) ccAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGtt > 1:21000371/1‑66 (MQ=255) ccAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGtt > 1:34149987/1‑66 (MQ=255) cAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGc < 1:2425960/67‑1 (MQ=255) cAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGc < 1:23347752/67‑1 (MQ=255) cAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGc < 1:28304041/67‑1 (MQ=255) gcgtcgtttcattagaatgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTa < 1:11358208‑M1/44‑1 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAAt < 1:22918071/68‑1 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAAt > 1:9089074/1‑68 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAAt > 1:7547607/1‑68 (MQ=255) cgtttcattagaatgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAAt > 1:15959645‑M1/21‑67 (MQ=255) gtttcattagaatgcgtaaAGTTACGCGAGGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATtc > 1:8583604‑M1/20‑68 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATtc < 1:26885843/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATtc < 1:9482128/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATtc < 1:32949091/68‑1 (MQ=255) cccGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATtct < 1:1948612/68‑1 (MQ=255) ggCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgt < 1:3317492/68‑1 (MQ=255) ggCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgt < 1:14125081/68‑1 (MQ=255) ggCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgt < 1:1995817/68‑1 (MQ=255) agaatgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGCAgt < 1:725724‑M1/57‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:33962509/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:14925256/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:17854458/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:18976077/67‑1 (MQ=255) atgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtgt > 1:2405246‑M1/9‑67 (MQ=255) atgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtg > 1:11654823‑M1/9‑66 (MQ=255) aaagCTTCACTTACCCGAAGATGAATGGGCTGAATTCTTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:4401305/65‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:12862793/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:12689724/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:4199455/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:3848094/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:23844042/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:17153328/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtg > 1:32761835/1‑66 (MQ=255) aaTGCTTCAGTTACGAGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:15494667/67‑1 (MQ=255) tGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTg < 1:14527759/68‑1 (MQ=255) gCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTgg < 1:22047015/68‑1 (MQ=255) gCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTgg < 1:29255217/68‑1 (MQ=255) AGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGATTAt < 1:22310362‑M1/68‑1 (MQ=255) | ATTGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGATTAT > CP009273/1240700‑1240834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |