New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1240767 =360 (0.870)42 (0.120) 21/96 NT 11.6% coding (152/441 nt) ycgY uncharacterized protein
?CP009273 = 1302830 333 (0.940)coding (73/1461 nt) clsA cardiolipin synthase 1

Only 100 of 526 total aligned reads displayed.

AGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACGGTT  >  CP009273/1302763‑1302897
                                                                   |                                                                   
aGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTaa                                                                     >  1:17584072/1‑68 (MQ=255)
 gAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGACCTGCGCGTCGTTTCATTAGAATGCGTAAa                                                                    <  1:9549368‑M2/68‑2 (MQ=255)
   aTGTATATAATCTACTGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGTGTAAag                                                                   >  1:10039191‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagt                                                                  <  1:19832036‑M2/68‑4 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:28725292‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:27777990‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:2145003‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:1825442‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAa                                                                    >  1:24059952‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAa                                                                    >  1:19401068‑M2/1‑65 (MQ=255)
       aaaTACTCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              >  1:12728095‑M2/1‑61 (MQ=255)
       aaaTAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              >  1:14520898‑M2/1‑61 (MQ=255)
        aataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgc                                                             <  1:23567185‑M2/68‑9 (MQ=255)
        aataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgc                                                             <  1:1244344‑M2/68‑9 (MQ=255)
        aataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              <  1:22995670‑M2/67‑8 (MQ=255)
        aataaaCAACAGCCAGGCCATCGCGGAGGGAACTCCGCGTCGTTTCATTACAATGCGTAAagttact                                                              <  1:31251281‑M2/67‑8 (MQ=255)
         ataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              <  1:26236259‑M2/66‑8 (MQ=255)
         ataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGcc                                                            <  1:2939202/68‑1 (MQ=255)
          taatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              <  1:25566135‑M2/65‑8 (MQ=255)
            atCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGc                                                         >  1:10447527/1‑68 (MQ=255)
            atCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGc                                                         >  1:4439408/1‑68 (MQ=255)
            atCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGc                                                         >  1:25336138/1‑68 (MQ=255)
             tCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgcgaaga                                                        >  1:34105577‑M2/1‑55 (MQ=255)
               aaCAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAAt                                                      >  1:5782818/1‑68 (MQ=255)
                aCAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgcgaagagga                                                     <  1:30055725‑M2/68‑17 (MQ=255)
                aCAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATg                                                     <  1:24476644/68‑1 (MQ=255)
                aCAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATg                                                     <  1:925706/68‑1 (MQ=255)
                aCAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATg                                                     <  1:25919319/68‑1 (MQ=255)
                  aGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGa                                                    >  1:6905349/1‑67 (MQ=255)
                   gCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGc                                                  >  1:12910509/1‑68 (MQ=255)
                     cAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgcgaagaggaatgg                                                 <  1:26656688‑M2/67‑21 (MQ=255)
                     cAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAg                                                   <  1:33342298/65‑1 (MQ=255)
                        gCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAAAGAGCAACCa                                             >  1:23157846/1‑68 (MQ=255)
                        gCCATCGCGGAGGGAACTGCGCGTCGTTTCAATAGAATGCGTAAAGTTACGCCTGCAATGAGCACCCa                                             >  1:4828833/1‑68 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgcgaagaggaatggtctga                                            <  1:18621975‑M2/68‑26 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgcgaagaggaatggtctga                                            <  1:6565808‑M2/68‑26 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAAc                                               <  1:19154762/65‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:19499233/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:27443549/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:8069371/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:24282171/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAg                                            >  1:7242761/1‑68 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:29792812/68‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:31959817/68‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           >  1:32209413/1‑68 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:15740022/68‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:6382684/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:7614411/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:3385567/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:4085177/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:22055695/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:12512426/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:17241846/68‑1 (MQ=255)
                             cgcgGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATc                                        <  1:20682828/68‑1 (MQ=255)
                             cgcgGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATc                                        <  1:10923920/68‑1 (MQ=255)
                                ggAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCa                                     <  1:20375934/68‑1 (MQ=255)
                                  aGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGa                                   >  1:165646/1‑68 (MQ=255)
                                   gggAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGaa                                  >  1:15336884/1‑68 (MQ=255)
                                   gggAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGaa                                  >  1:16322667/1‑68 (MQ=255)
                                      aaCTGCGCGTCGTTTCATTAGAATGCGTAAagttacgcgaagaggaatggtctgaattctttttttgg                               <  1:34415258‑M2/68‑39 (MQ=255)
                                        cTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGcc                             >  1:1499186/1‑68 (MQ=255)
                                        cTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGcc                             >  1:31786593/1‑68 (MQ=255)
                                          gcgcGTCGTTTAATTAGAATGCGTAAagttacgcgaagaggaatggtctgaattattttattggtt                             <  1:835085‑M2/66‑41 (MQ=255)
                                            gcgTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacc                         >  1:31055206/1‑68 (MQ=255)
                                            gcgTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacc                         <  1:32117607/68‑1 (MQ=255)
                                              gtcgtTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacca                        <  1:29168647/67‑1 (MQ=255)
                                              gtcgtTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacca                        <  1:5487787/67‑1 (MQ=255)
                                              gtcgtTTCATTAGAATGCGTAAAGTTACGCATGCAATGAGCAACCAGTATCCCAGAATGGccaacca                        >  1:11989102/1‑67 (MQ=255)
                                                cgtTTCATTAGAATGCGTAAagttacgcgaagaggaatggtctgaattctttttttggttgctaaat                      >  1:15959645‑M2/1‑20 (MQ=255)
                                                 gtTTCATTAGAATGCGTAAagttacgcgaggaggaatggtctgaattctttttttggttgctaaattc                    >  1:8583604‑M2/1‑19 (MQ=255)
                                                    tCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCAcc                 <  1:28065996/68‑1 (MQ=255)
                                                    tCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCAcc                 <  1:14300575/68‑1 (MQ=255)
                                                       ttAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAAc              <  1:30459200/68‑1 (MQ=255)
                                                       ttAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAAc              <  1:22302204/68‑1 (MQ=255)
                                                        tAGTATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:17101930/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:11296205/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:32980025/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:28305174/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:21958744/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:27172993/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:22543636/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:592960/68‑1 (MQ=255)
                                                         aGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGt            <  1:13990307/68‑1 (MQ=255)
                                                           aaTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGaa                                  >  1:13508157/1‑44 (MQ=255)
                                                           aaTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGtat          >  1:4944148/1‑68 (MQ=255)
                                                           aaTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGtat          >  1:18887699/1‑68 (MQ=255)
                                                           aaTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGtat          >  1:20970381/1‑68 (MQ=255)
                                                           aaTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGtat          >  1:8874144/1‑68 (MQ=255)
                                                            aTGCGTAAagttacgcgaagaggaatggtctgaattctttttttggttgctaaattctctggagtgt          >  1:11115832‑M2/1‑8 (MQ=255)
                                                            aTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGta           <  1:10247414/66‑1 (MQ=255)
                                                            aTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGta           <  1:5245595/66‑1 (MQ=255)
                                                            aTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGta           <  1:17972617/66‑1 (MQ=255)
                                                            aTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGta           <  1:1315169/66‑1 (MQ=255)
                                                            aTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGta           <  1:11768892/66‑1 (MQ=255)
                                                            aTGAGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGta           <  1:32700904/66‑1 (MQ=255)
                                                                gTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACg     <  1:33615661/68‑1 (MQ=255)
                                                                gTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACg     <  1:24815173/68‑1 (MQ=255)
                                                                  aaaGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACgg    <  1:25161781/67‑1 (MQ=255)
                                                                  aaaGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACgg    <  1:11565258/67‑1 (MQ=255)
                                                                  aaaGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACGGt   <  1:23799436/68‑1 (MQ=255)
                                                                   |                                                                   
AGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACGGTT  >  CP009273/1302763‑1302897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.