| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1958516 = | 319 (0.770) | 17 (0.050) | 8/96 | NT | 6.6% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 208 (0.590) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
Only 100 of 478 total aligned reads displayed.
TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 | tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:10483075‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgctacatggcatgagcatgggacac < 1:19733454‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatggtacac < 1:28095037‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:17457508‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:32347203‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:15216797‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:14984824‑M1/1‑1 (MQ=255) ggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgcg < 1:738593‑M1/4‑1 (MQ=255) ggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcgg > 1:20590032‑M1/64‑68 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:22316056‑M1/6‑1 (MQ=255) gtcattaacatagtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:32620421‑M1/6‑1 (MQ=255) aGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCgcggc < 1:22199018/68‑1 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggcg < 1:26422605‑M1/7‑1 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:32790494‑M1/62‑67 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:14472671‑M1/62‑67 (MQ=255) tGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGCCACGCGTAACCATGACCCCCGcggcggg > 1:27664540/1‑67 (MQ=255) tGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCgcggcg < 1:1776881/66‑1 (MQ=255) tGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGt < 1:4224109/68‑1 (MQ=255) ttCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGa < 1:14085151/68‑1 (MQ=255) ttCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGa < 1:693374/68‑1 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGaaa > 1:1826836/1‑68 (MQ=255) cATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCa < 1:16551493/68‑1 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:5595563/1‑68 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:24810465/1‑68 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAc > 1:21364420/1‑67 (MQ=255) tGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGTAATCACCa > 1:21508202/1‑67 (MQ=255) tGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCa > 1:26263593/1‑67 (MQ=255) tGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCa > 1:14553345/1‑67 (MQ=255) gCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc < 1:6386029/68‑1 (MQ=255) ccAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCgg > 1:28510542/1‑68 (MQ=255) cAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGa < 1:5934809/68‑1 (MQ=255) tCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtg > 1:29084379/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:22653907/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:8448149/1‑68 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:7596287/68‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:26728724/1‑68 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:10025115/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:29724906/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:32173879/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATCACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:2977516/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:1673583/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:13873863/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:18663600/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:28725027/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:905351/1‑67 (MQ=255) cGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGccacc > 1:15706915/1‑68 (MQ=255) gCTGACACGCGTAACGATGCCCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGa > 1:23095717/1‑67 (MQ=255) gCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGAc < 1:8001282/68‑1 (MQ=255) gCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGAc < 1:13614211/68‑1 (MQ=255) gACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGt < 1:27445322/68‑1 (MQ=255) acatggcatgagcatgggacaCGCGGCGGGAGAAATAACCAGCGCCGGAATTTGTGCCACCAGACCg < 1:4460296‑M1/46‑1 (MQ=255) cacGCGTAACGATGCCCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:19039846/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCCCCAGCGCCGGAATTTGTGCCACCAGCCCGTc > 1:33973463/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCCCCAGACCGTc > 1:8955798/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:9544498/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:13206707/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:7067075/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:28329057/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:23836430/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:6638887/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:21789379/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:20227006/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:12382499/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:30061744/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:11911626/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:5170268/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:4573075/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCg < 1:6252163/68‑1 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCg < 1:14287524/68‑1 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCg < 1:24559296/68‑1 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGAGCCACCAGACCGTc > 1:941537/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAAACACCAGCGCCGGAATTTGTGCCACCCGCCCGTc > 1:25722198/1‑67 (MQ=255) cgcgTACCGATGAACCCATCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc < 1:31497403/68‑1 (MQ=255) cgcgTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc < 1:9697295/68‑1 (MQ=255) catgagcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCaa < 1:25058924‑M1/53‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:33735791/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:11123776/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:11538839/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:18097295/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:12189347/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:30993490/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:31814118/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:16328174/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:15982442/68‑1 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:31356507/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:33006542/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:23934756/1‑68 (MQ=255) catgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa < 1:34248201‑M1/59‑1 (MQ=255) ggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCCCCAGCCCGTCGCCAATGGTCAATa < 1:19961137‑M1/62‑1 (MQ=255) gacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCCCCAGACCGTCGCCAATGGTCAATAGc < 1:10691363‑M1/64‑1 (MQ=255) gacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:35573‑M1/64‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCTCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:2204288/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:25483213/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:27161114/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:19327616/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:13365870/1‑68 (MQ=255) acaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCg < 1:10445716‑M1/65‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:16945770/68‑1 (MQ=255) CGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGtat < 1:30494076‑M1/68‑1 (MQ=255) CGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGtat < 1:24212545‑M1/68‑1 (MQ=255) | TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |