| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2724439 = | 360 (0.870) | 100 (0.280) +ACAGCTT |
7/98 | NT | 24.1% | noncoding (78/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | 3422039 = | NA (NA) | noncoding (83/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon | |||||
Only 100 of 753 total aligned reads displayed.
CCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAA > CP009273/2724372‑2724504 | tcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttgctgct < 1:18584549‑M1/6‑1 (MQ=255)tcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttgctgct < 1:14738780‑M1/6‑1 (MQ=255)tcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttgctgct < 1:2013461‑M1/6‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:18212583/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:962114/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:11071468/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:12218213/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:2767878/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:6762310/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:30566314/68‑1 (MQ=255) tCCATCAGCCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:28557930/68‑1 (MQ=255) cATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCtt > 1:16992997/1‑65 (MQ=255) cATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCt < 1:2693231/68‑1 (MQ=255) attgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttGCTGCTTc < 1:32598852‑M1/8‑1 (MQ=255) ttgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttGCTGCTTc < 1:27355782‑M1/8‑1 (MQ=255) aTCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCtt > 1:7891980/1‑64 (MQ=255) tCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCATCAAGCTGCTGCCTGt > 1:26449353/1‑68 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCTGCAAGATGCTTCCTGTTAcc > 1:32391331/1‑68 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCCGCAAGCTGCTTCCTGTTAcc > 1:9812542/1‑68 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTAcc > 1:2720395/1‑68 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTAcc > 1:15558706/1‑68 (MQ=255) cccAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGAc < 1:34169771/68‑1 (MQ=40) cAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACtt < 1:9162153/68‑1 (MQ=40) cAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACtt < 1:28395492/68‑1 (MQ=40) aGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACtt > 1:31929239/1‑67 (MQ=40) gACAATACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTga > 1:5654717/1‑67 (MQ=255) aCATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCa > 1:15793060/1‑68 (MQ=40) aCATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCa > 1:24952053/1‑68 (MQ=40) aCATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCa > 1:2172259/1‑68 (MQ=40) cATTACTCCCCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:33185402/1‑68 (MQ=255) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTg < 1:8950610/65‑1 (MQ=40) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTg < 1:31248516/65‑1 (MQ=40) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGc < 1:1378476/66‑1 (MQ=255) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:16434663/1‑68 (MQ=40) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:11515128/1‑68 (MQ=40) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:19395816/1‑68 (MQ=40) cATTACTCACCCGTCCGCCAATCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:10935912/1‑68 (MQ=255) ttACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgt < 1:21330832/68‑1 (MQ=255) ttACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgt < 1:25173323/68‑1 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:18773295/68‑1 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:27944727/68‑1 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:17922911/68‑1 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:15240735/68‑1 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:25378482/68‑1 (MQ=255) aacacaagcaaggcgaacggaaacaggaagccgcttCCTGCTGCCTGTTACCGTTCGACTTGCAtgtg > 1:23712061‑M1/37‑68 (MQ=255) aCTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATgtgt > 1:428176/1‑68 (MQ=255) cTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGtt > 1:21554967/1‑68 (MQ=255) cTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGtt > 1:16671035/1‑68 (MQ=255) tCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTa > 1:7668894/1‑68 (MQ=255) tCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTa > 1:6963236/1‑68 (MQ=255) cccGTCCGCCACTCGTCAGCGAAGCAGTAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:1739435/1‑67 (MQ=255) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTTCCGTTCGACTTGCATGTGTTAgg > 1:29234491/1‑67 (MQ=255) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:30849563/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:3499949/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:6172358/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:10455357/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:10014612/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:24315336/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:23348748/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:22144103/1‑67 (MQ=40) cGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:25626997/1‑65 (MQ=40) cGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:4177807/1‑65 (MQ=40) gCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTgccg > 1:12622366/1‑67 (MQ=40) gCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTgccg > 1:29744842/1‑67 (MQ=40) gCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTgccg > 1:16223173/1‑67 (MQ=40) aCTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCa > 1:31448924/1‑67 (MQ=40) cTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGc < 1:14343050/68‑1 (MQ=40) cTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGc > 1:33841673/1‑68 (MQ=40) tCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCg < 1:14146817/68‑1 (MQ=40) cGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGt < 1:26179105/68‑1 (MQ=40) cGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGt > 1:13218087/1‑68 (MQ=40) acagcaaacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCa < 1:4867324‑M1/49‑1 (MQ=255) gaaacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCaa > 1:10742247‑M1/16‑65 (MQ=255) gaaacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCaa < 1:8295208‑M1/50‑1 (MQ=255) gaaacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAt > 1:21052564‑M1/16‑66 (MQ=255) gaaacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAt > 1:33058991‑M1/16‑66 (MQ=255) gaaacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAt > 1:13441706‑M1/16‑66 (MQ=255) gaaacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAt > 1:14511285‑M1/16‑66 (MQ=255) gaaacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAt > 1:24063916‑M1/16‑66 (MQ=255) aacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGa > 1:9374873‑M1/14‑68 (MQ=255) aacagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGa > 1:5409163‑M1/14‑68 (MQ=255) cagcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAg < 1:26799145‑M1/56‑1 (MQ=255) agcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGcc < 1:25924009‑M1/58‑1 (MQ=255) agcaagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGcc < 1:8655943‑M1/58‑1 (MQ=255) aagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGc > 1:12033203‑M1/8‑64 (MQ=255) aagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATg > 1:19084061‑M1/8‑68 (MQ=255) aagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATg > 1:29928998‑M1/8‑68 (MQ=255) aagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATg < 1:6643218‑M1/61‑1 (MQ=255) aagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATg > 1:1285765‑M1/8‑68 (MQ=255) aagctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATg > 1:33411819‑M1/8‑68 (MQ=255) gctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGa < 1:2240175‑M1/62‑1 (MQ=255) ctgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATc < 1:2286981‑M1/64‑1 (MQ=255) tgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGAt > 1:30190812‑M1/4‑66 (MQ=255) tgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGAt > 1:32132790‑M1/4‑66 (MQ=255) tgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGAt > 1:19868981‑M1/4‑66 (MQ=255) tgtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGAt > 1:4578488‑M1/4‑66 (MQ=255) gtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCaa > 1:24692722‑M1/3‑68 (MQ=255) gtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCaa > 1:7114661‑M1/3‑68 (MQ=255) gtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCaa > 1:28856172‑M1/3‑68 (MQ=255) gtTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCaa > 1:20606730‑M1/3‑68 (MQ=255) | CCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAA > CP009273/2724372‑2724504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |