New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2724439 =	360 (0.870)	100 (0.280) +ACAGCTT	7/98	NT	24.1%	noncoding (78/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
	?	CP009273	3422039 =	NA (NA)					noncoding (83/1542 nt)	rrsD	16S ribosomal RNA of rrnD operon

CCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCTGTTACCGTTCGACTTGCATGT  >  CP009273/3421975‑3422069                                                                 |                               ccgcTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTg                             <  1:16982879/65‑1 (MQ=1)     tcaaTCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGttt                          >  1:32984835/4‑67 (MQ=1)                          cagtACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCTGTTACCGTTCGACTTGCAt    >  1:16234528/4‑68 (MQ=1)                            ttccTCACCCGTCCGCCAATCGTCAGCGAAACCGCAAGCTGTTTCCGGTTACCGTTCGACGTGCAtgt  <  1:24072007/65‑1 (MQ=1)                                                                 |                               CCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCTGTTACCGTTCGACTTGCATGT  >  CP009273/3421975‑3422069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.