| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 727866 | 1 (0.000) | 10 (0.030) | 5/96 | NT | 92.1% | coding (2828/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 729698 | NA (NA) | pseudogene (110/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
GCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAT > CP009273/729681‑729764 | gCCGGATACCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGTCCGTCACGGCAGGCTGACgg > 1:16967890/1‑68 (MQ=255)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:14496733/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:6396907/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:10716889/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:16393003/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:5678837/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:27158893/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:17991737/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:25968164/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:25225830/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:19738570/1‑68 (MQ=33) ccGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGCCgg < 1:16150242/67‑1 (MQ=14) cGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGgag < 1:20925084/68‑1 (MQ=35) cGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGgag < 1:20884102/68‑1 (MQ=35) aTAACCGTATCGCCCGTGCCGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:23890654/1‑68 (MQ=25) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaa < 1:17305524/67‑1 (MQ=35) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTAAGACCGTCACGGCAGGCTGACGGAGaaa > 1:108213/1‑68 (MQ=25) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:26666409/1‑67 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:34459721/1‑67 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:9383068/1‑67 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa < 1:21399855/67‑1 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:12184034/1‑67 (MQ=35) aCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAAcc > 1:632467/1‑68 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAGCCg > 1:7337124/1‑67 (MQ=25) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:19320156/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:23596515/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:11568879/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:21173092/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:2905645/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:31186882/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:32727408/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:1891667/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:13282188/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:8073999/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCgc > 1:20623222/1‑66 (MQ=25) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:16207399/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:1918035/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:34050351/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:9347306/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:11447341/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:20479912/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:28138582/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:14342833/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:16782256/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAc < 1:3484869/68‑1 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAc < 1:22971985/68‑1 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAc < 1:5161152/68‑1 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:29504888/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:30114677/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:1029017/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:32779536/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:25707684/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:3538584/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:17913676/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:16364238/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGCCAGGCTGACGGAGAAAACCGAcc > 1:2457551/1‑67 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGACAACCGACCTCa > 1:10997101/1‑68 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGCCCTCa > 1:27389520/1‑68 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:1631730/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:14002619/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:13870436/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:17380115/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:10211640/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:23900915/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:3549426/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:18608906/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:33866664/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:20106845/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:20298696/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:3029319/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:20619170/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:2557826/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:15068952/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:11856832/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:26895241/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:21614727/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:10030311/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:12474161/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:12478377/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTAACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:32188334/1‑68 (MQ=25) cGCCCGTGACGCGCACTATCTTATCCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACAGACCTCa > 1:22442808/1‑68 (MQ=11) gCCCGTGACGCGCAGTTTCTTTACCGGTATGACCGTCACGGCAGGCTGCCGGAGAAAACCGCCCTCa > 1:27095733/1‑67 (MQ=11) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:28813365/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:19215747/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:34447384/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:11112840/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:18621552/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:12102449/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:33397718/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:13065961/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:8204931/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt < 1:7061699/68‑1 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTAAGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:30072603/1‑67 (MQ=255) cccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAATACCGCCCTCAt > 1:28312870/1‑67 (MQ=255) | GCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAT > CP009273/729681‑729764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |