New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3999175 =419 (1.010)20 (0.060) 8/96 NT 5.5% intergenic (+84/‑49) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase
?CP009273 3999197 = 329 (0.930)intergenic (+106/‑27) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase

Only 100 of 535 total aligned reads displayed.

CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAA  >  CP009273/3999130‑3999264
                                                                   |                                                                   
ccAGGATTACCCTCTCAGAGACTTAAAGCGTTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:14039362/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:9532640/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:26567825/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                    <  1:26280631/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                    <  1:32087691/68‑1 (MQ=255)
  cttccgcctgcgccacattcaccccgatttcctgaaataaaaaAAGGCCCTGCAAATAGAGCCTGttt                                                                   <  1:143413‑M1/25‑1 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGttt                                                                   <  1:17691562/65‑1 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGttt                                                                   <  1:18858461/65‑1 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGttt                                                                   <  1:510674/65‑1 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:6158870/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:7590036/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:22939889/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:20798611/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:7966888/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:869647/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:19007030/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:9667343/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:25288258/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:29443402/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:3900109/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:31506748/1‑68 (MQ=255)
           ctctCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                                          <  1:31118609/68‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                       <  1:5489918/68‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                       <  1:22107526/68‑1 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:16724060/1‑67 (MQ=255)
                acattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAAt                                                     <  1:10493593‑M2/17‑1 (MQ=255)
                acattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAAt                                                     <  1:2355593‑M2/17‑1 (MQ=255)
                   ttcaccccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgg                                                  <  1:440946‑M1/42‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                   <  1:4809425/67‑1 (MQ=255)
                    tcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCggg                                                 <  1:32399021‑M2/21‑1 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGTCGCTGAAAATAGCGCCTGTTTTTATTTAAGGCAATCggg                                                 >  1:26129691/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:28442285/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:21396587/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:20976860/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:20167949/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:19765755/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:1133975/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:14871281/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:2991120/1‑68 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                                                <  1:6379859/68‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                                                <  1:3630558/68‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:12061560/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:22461584/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:28984509/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:15348428/67‑1 (MQ=255)
                       ccccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTg                                              <  1:14699668‑M1/46‑1 (MQ=255)
                        cccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                                             <  1:11513530‑M1/47‑1 (MQ=255)
                        cccgattccctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCGGGGTGa                                             <  1:23485533‑M2/25‑1 (MQ=255)
                        aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                                             <  1:6735241/68‑1 (MQ=255)
                        aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                                             <  1:18200740/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           <  1:30067850/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:30317262/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           <  1:25091392/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           <  1:24541294/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           <  1:6971889/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:7308408/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:18608979/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           <  1:9009141/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:17252637/1‑68 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                          >  1:14508471/1‑68 (MQ=255)
                            cATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgt                                         >  1:13283232/1‑68 (MQ=255)
                            attgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgt                                         <  1:18005704‑M1/51‑1 (MQ=255)
                               tGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc                                      <  1:23935870/68‑1 (MQ=255)
                                gCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgcg                                     <  1:10284355/68‑1 (MQ=255)
                                  aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa                                   >  1:11623334/1‑68 (MQ=255)
                                  aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa                                   >  1:27650850/1‑68 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg                                  <  1:16013468/66‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                                <  1:20453597/68‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                                <  1:10008461/68‑1 (MQ=255)
                                      tctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCg                               <  1:2863089/68‑1 (MQ=255)
                                      tctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCg                               <  1:21929450/68‑1 (MQ=255)
                                      tctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCg                               <  1:33154288/68‑1 (MQ=255)
                                       ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg                              >  1:32365231/1‑68 (MQ=255)
                                       ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg                              >  1:27461457/1‑68 (MQ=255)
                                        tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa                             <  1:33853896/68‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                          <  1:16888175/67‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                          <  1:7060533/67‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                          <  1:31345826/67‑1 (MQ=255)
                                            aCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg                         <  1:4654565‑M1/67‑1 (MQ=255)
                                              AGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtgt                        >  1:27304165‑M1/1‑67 (MQ=255)
                                              AGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtgt                        >  1:8198505‑M1/1‑67 (MQ=255)
                                                 CGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTg                      >  1:1384675‑M1/1‑66 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:16495853‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:23343145‑M1/1‑67 (MQ=255)
                                                      aaaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg               >  1:10946404/1‑68 (MQ=255)
                                                      aaaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg               >  1:28012702/1‑68 (MQ=255)
                                                      aaaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg               >  1:30487547/1‑68 (MQ=255)
                                                      aaaaTAGCGCCTGTATTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg               >  1:23850686/1‑68 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg             >  1:30813636/1‑67 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt            <  1:26972920/68‑1 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt            <  1:17305385/68‑1 (MQ=255)
                                                          tAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt            >  1:5955020/1‑67 (MQ=255)
                                                            gcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCg         >  1:34247934‑M2/8‑68 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:22789203‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:2574509‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       >  1:12941729‑M2/6‑68 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:33462311‑M2/63‑1 (MQ=255)
                                                                ctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGc     <  1:19460983‑M2/65‑1 (MQ=255)
                                                                ctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGc     <  1:12296824‑M2/65‑1 (MQ=255)
                                                                 tgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCt    <  1:12605649‑M2/66‑1 (MQ=255)
                                                                   |                                                                   
CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAA  >  CP009273/3999130‑3999264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.