New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4046794524 (1.260)27 (0.080) 11/94 NT 5.3% intergenic (+16/+213) hemN/yshB coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein
?CP009273 = 4046815 531 (1.530)intergenic (+37/+192) hemN/yshB coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein

Only 100 of 712 total aligned reads displayed.

GCGGATGCAGCAGTTCTCTCGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTAT  >  CP009273/4046748‑4046882
                                                                   |                                                                   
     tGCAGCAGTTCTCTCGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAaagc                                                                 <  1:6185926‑M2/67‑5 (MQ=255)
        agcagTTCTCTCGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAaagcgcc                                                              >  1:193300‑M2/1‑60 (MQ=255)
          cagTTCTCTCGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATc                                                           >  1:22412378/1‑68 (MQ=255)
           agTTCTCTCGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATc                                                           <  1:29853985/67‑1 (MQ=255)
           agTTCTCTCGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATc                                                           <  1:25106629/67‑1 (MQ=255)
           agTTCTCTCGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCa                                                          >  1:8290137/1‑68 (MQ=255)
              tctctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAaagcgccattcact                                                       <  1:33009744‑M2/68‑15 (MQ=255)
              tctctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCaa                                                         <  1:3110017/66‑1 (MQ=255)
              tctctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCaa                                                         <  1:25784060/66‑1 (MQ=255)
              tctctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAAtg                                                       >  1:28398492/1‑68 (MQ=255)
              tctctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAACTAGAAAACGAAAGAGCCATCAAtg                                                       >  1:30486814/1‑68 (MQ=255)
               ctctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCTAtgt                                                      <  1:28527159/68‑1 (MQ=255)
               ctctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAAtgt                                                      <  1:13041106/68‑1 (MQ=255)
               ctctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAAtgt                                                      <  1:26146202/68‑1 (MQ=255)
                tctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAAtgt                                                      >  1:15578654/1‑67 (MQ=255)
                tctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAAtgt                                                      >  1:2807095/1‑67 (MQ=255)
                tctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAAtgt                                                      >  1:9328369/1‑67 (MQ=255)
                 ctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTCGAAAACGAAAGCGCCATCAATGTGc                                                    <  1:8514136/68‑1 (MQ=255)
                 ctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGc                                                    <  1:27614472/68‑1 (MQ=255)
                 ctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGc                                                    <  1:10499792/68‑1 (MQ=255)
                 ctcGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGc                                                    <  1:12491034/68‑1 (MQ=255)
                     ggTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgag                                                >  1:32821204/1‑68 (MQ=255)
                     ggTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgag                                                >  1:26548198/1‑68 (MQ=255)
                     ggTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgag                                                >  1:10103255/1‑68 (MQ=255)
                     ggTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgag                                                >  1:22216508/1‑68 (MQ=255)
                       tGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgaga                                               <  1:29666655/67‑1 (MQ=255)
                       tGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgaga                                               <  1:11342094/67‑1 (MQ=255)
                       tGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgaga                                               <  1:424592/67‑1 (MQ=255)
                       tGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgaga                                               <  1:16212033/67‑1 (MQ=255)
                       tGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgaga                                               <  1:7806463/67‑1 (MQ=255)
                       tGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTgaga                                               <  1:6502511/67‑1 (MQ=255)
                          tttAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACaa                                           <  1:20704687/68‑1 (MQ=255)
                           ttAAATAGTGAATGGCTCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCATTGTGCTGAGAACAAg                                          <  1:3845531/68‑1 (MQ=255)
                           ttAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAg                                          >  1:5428316/1‑68 (MQ=255)
                           ttAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAg                                          >  1:11792415/1‑68 (MQ=255)
                            tAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAaaccgccattcactatttaaatcacccg                                         >  1:12733691‑M2/1‑40 (MQ=255)
                            tAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGa                                         >  1:32108867/1‑68 (MQ=255)
                               aTAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGAtt                                       >  1:15204404/1‑67 (MQ=255)
                               aTAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGAtt                                       >  1:6656173/1‑67 (MQ=255)
                               aTAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGAtt                                       >  1:4836082/1‑67 (MQ=255)
                               aTAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGAtt                                       >  1:18943514/1‑67 (MQ=255)
                               aTAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAAAAAGAtt                                       >  1:8871889/1‑67 (MQ=255)
                                tAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:5136779/1‑67 (MQ=255)
                                tAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:11003029/1‑67 (MQ=255)
                                tAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGc                                     <  1:22758486/68‑1 (MQ=255)
                                tAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGc                                     <  1:23818250/68‑1 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:30764221/1‑66 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:9576139/1‑66 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:25485483/1‑66 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:33978518/1‑66 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:24697477/1‑66 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:24173810/1‑66 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:2344181/1‑66 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:21201973/1‑66 (MQ=255)
                                 aGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTg                                      >  1:1873294/1‑66 (MQ=255)
                                    gAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCt                                   <  1:3573076/66‑1 (MQ=255)
                                    gAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCt                                   <  1:28657053/66‑1 (MQ=255)
                                    gAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGa                                 >  1:24533674/1‑68 (MQ=255)
                                    gAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGa                                 >  1:12134716/1‑68 (MQ=255)
                                      aTGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGAt                                >  1:27155697/1‑67 (MQ=255)
                                       tGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATgc                              <  1:23184583/68‑1 (MQ=255)
                                        ggCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATgc                              >  1:13632324/1‑67 (MQ=255)
                                         gcgcTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATgc                              >  1:4664647/1‑66 (MQ=255)
                                         gcgcTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATgc                              >  1:12290238/1‑66 (MQ=255)
                                         gcgcTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATgc                              >  1:14338955/1‑66 (MQ=255)
                                           gcTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTg                          >  1:1952156/1‑68 (MQ=255)
                                           gcTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTg                          >  1:7282983/1‑68 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:11132457/67‑1 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:29366927/67‑1 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:21940433/67‑1 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:14719319/67‑1 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:34436332/67‑1 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:7567169/67‑1 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:26925402/67‑1 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:31399365/67‑1 (MQ=255)
                                             ttCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:16578216/67‑1 (MQ=255)
                                             atCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTgg                         <  1:14851284/66‑1 (MQ=255)
                                               cGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGAAGCGCTGGGca                      <  1:32613407/68‑1 (MQ=255)
                                                gTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGcaa                     <  1:17014632/68‑1 (MQ=255)
                                                gTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGca                      >  1:33596480/1‑67 (MQ=255)
                                                   tACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGcaacaa                  >  1:2165166/1‑68 (MQ=255)
                                                       aaGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACaaaa                >  1:8004174/1‑66 (MQ=255)
                                                        aGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCt             <  1:17759326/68‑1 (MQ=255)
                                                        aGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCt             <  1:6938048/68‑1 (MQ=255)
                                                         gTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACaaaa                >  1:15857301/1‑64 (MQ=255)
                                                           aGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGt           <  1:10786340/67‑1 (MQ=255)
                                                           aGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGt           <  1:19756084/67‑1 (MQ=255)
                                                           aGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGt           <  1:13894981/67‑1 (MQ=255)
                                                              aaaCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGaa       >  1:18533365/1‑68 (MQ=255)
                                                              aaaCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGaa       <  1:18177279/68‑1 (MQ=255)
                                                              aaaCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGaa       <  1:27378031/68‑1 (MQ=255)
                                                                aCGAaagcgccattcactatttaaatcacccgagagaactgctgcatccgcgctttctggcgcagata     <  1:13319887‑M2/68‑65 (MQ=255)
                                                                aCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAat     >  1:5953578/1‑68 (MQ=255)
                                                                aCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAat     >  1:20251546/1‑68 (MQ=255)
                                                                aCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAat     <  1:17260225/68‑1 (MQ=255)
                                                                aCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAat     >  1:31777440/1‑68 (MQ=255)
                                                                aCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAat     <  1:27800732/68‑1 (MQ=255)
                                                                aCGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAat     >  1:29134939/1‑68 (MQ=255)
                                                                   aaaGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAattat  >  1:5797766/1‑68 (MQ=255)
                                                                   aaaGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAattat  >  1:10575359/1‑68 (MQ=255)
                                                                   |                                                                   
GCGGATGCAGCAGTTCTCTCGGGTGATTTAAATAGTGAATGGCGCTTCGTTTACAAAGTAGAAAACGAAAGCGCCATCAATGTGCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTAT  >  CP009273/4046748‑4046882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.