| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4388394 = | 379 (0.980) | 18 (0.050) | 11/100 | NT | 5.4% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 294 (0.860) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4388466‑4388394‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > CP009273/4388416‑4388482 GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:25068055/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:15153744/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:8324718/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:31340689/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:14190348/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCGGCGCATTCGG < 1:7614512/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACATCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:8434615/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:15578624/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:3676862/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:23417057/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:30033513/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:8728471/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:22562427/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:20370744/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:25915714/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:24958154/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:17726479/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:13552622/67‑1 GCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAG > 1:4095939/1‑68 GCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAG > 1:31321257/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCTCCATGCTGGTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:7465400/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:9471700/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:15504857/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:3205586/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:21239964/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:8101014/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:8137008/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:30679949/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCAATCGGCCAGG > 1:14097314/1‑68 GTTTGCTAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:22709156/67‑1 GTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:6395908/67‑1 GTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:29186852/67‑1 GTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:7693563/67‑1 GTTTGCAAAAGCTGGCGATACACTACACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:9706245/67‑1 TGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTAC < 1:19100984/68‑1 AAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCA < 1:14682683/67‑1 AAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAA < 1:20877788/68‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:23444087/67‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:12473814/67‑1 GGCGATACACTTCAGCTTGCTGTCTCTGGTAGCCGGGCGGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:14437253/68‑1 ATACACTTCACCATGCCGTTGCTGGTAGCCGGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGG < 1:9047849/68‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGT < 1:26251945/68‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGT < 1:22754719/68‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGG < 1:25633582/67‑1 CACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGA < 1:28900416/68‑1 CACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGA < 1:4145906/68‑1 CACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGA < 1:15310220/68‑1 CACTTCACCTTGCTGTTTCTGGGCGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGA < 1:21318503/68‑1 CTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAG < 1:8231566/68‑1 TCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAGTG < 1:6398816/68‑1 TCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAGTG < 1:2065065/68‑1 CCTTGCTGTTCCTGGAAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTAT < 1:11922652/68‑1 GTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGC < 1:23423737/68‑1 CCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAA > 1:15107884/1‑68 CCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAA > 1:11866967/1‑68 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA > 1:15613898/1‑68 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:1805083/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:18386390/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:1492999/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:8366443/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:11286634/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:24169416/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:24383125/68‑1 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:16355891/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:23016063/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:29348240/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:12923246/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:23470495/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCAATGCAAAAATTA > 1:14040732/1‑68 GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4388466‑4388394‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > CP009273/4388416‑4388482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |