| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4388394 = | 379 (0.980) | 18 (0.050) | 11/100 | NT | 5.4% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 294 (0.860) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
Only 100 of 463 total aligned reads displayed.
CAGCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACG > CP009273/4388328‑4388461 | cAGCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGcccc < 1:31615186/67‑1 (MQ=255)cAGCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGcccc < 1:1454646/67‑1 (MQ=255)cAGCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGcccc < 1:31177618/67‑1 (MQ=255)cAGCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGcccc < 1:25337507/67‑1 (MQ=255) tttttgcatcggcgcgggcgtttgcaaaagctggcgatacacttcaccttgctgtttctggtagCCTg < 1:24169416‑M1/4‑1 (MQ=255) gCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTg > 1:1890382/1‑68 (MQ=255) cTCGTGAGCCGGTAGCTCCGCGCTACCCTCCTGCGCCAGCATCCGGCAGTCGTCCGGCTGCCCCCTg > 1:13241566/1‑67 (MQ=255) tCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTgg < 1:26670670/67‑1 (MQ=255) tCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTgg < 1:3333120/67‑1 (MQ=255) tCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGc < 1:14325634/68‑1 (MQ=255) gAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGaa < 1:31940244/68‑1 (MQ=255) aGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAAt > 1:18578536/1‑68 (MQ=255) aGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAAt > 1:26544731/1‑68 (MQ=255) gCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAAt > 1:29431348/1‑67 (MQ=255) cGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATgc < 1:21322866/67‑1 (MQ=255) accTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGc < 1:20796621/66‑1 (MQ=255) aGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAg < 1:19690920/67‑1 (MQ=255) tCCGCGCTACCCTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAg > 1:14075281/1‑68 (MQ=255) tCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCCGCCAg > 1:1937866/1‑68 (MQ=255) tCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGcc < 1:19813488/66‑1 (MQ=255) tCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGcc < 1:10831112/66‑1 (MQ=255) ccGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAgg < 1:27298985/68‑1 (MQ=255) gcgcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCt < 1:10751600/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:19113239/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:2482191/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:24520950/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:23021539/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:22841315/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:30105057/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:13684647/68‑1 (MQ=255) tACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCa < 1:10938633/68‑1 (MQ=255) tACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCa < 1:30828361/68‑1 (MQ=255) tACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCa < 1:25460541/68‑1 (MQ=255) acacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTATCAg < 1:29154145/68‑1 (MQ=255) acacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAg > 1:4532945/1‑68 (MQ=255) cacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGa < 1:12908787/68‑1 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTCCCAGaa > 1:15828709/1‑68 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:17770155/1‑68 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:11669705/1‑68 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:12128639/1‑68 (MQ=255) cTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:12637060/1‑67 (MQ=255) tCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAAc < 1:7937542/68‑1 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCTAATGCGCAGCCAGGCTACCAGAAACa < 1:25962343/68‑1 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:6318302/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa < 1:2504230/68‑1 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:7358075/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:882768/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:10244016/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:921134/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:15059069/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:15682747/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:17017248/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:1736974/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCACCATGTCAGAATGCGCAGCCAGGCTACAATAAACa > 1:28533668/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCAGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa < 1:16588085/68‑1 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc < 1:24010210/68‑1 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc > 1:21958262/1‑68 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc > 1:668569/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCaa < 1:28205336/67‑1 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:11402538/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg < 1:7195530/68‑1 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:20387275/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:29624270/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:4235277/1‑68 (MQ=255) atacacttcaccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTTCCAGGAACAGCAAgg < 1:11922652‑M1/40‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:18980754/67‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:5733589/67‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:10004483/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt > 1:15316523/1‑68 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:27018910/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:20972071/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt > 1:8489300/1‑68 (MQ=255) cAGCATCAGGCAGTCGGCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:23479574/68‑1 (MQ=255) cAGCATCAGGCAGTCGGCCGGCTGCCCCCTGGACGAATTCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:31742875/67‑1 (MQ=255) cttcaccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAg < 1:8231566‑M1/45‑1 (MQ=255) aTCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:15146088/66‑1 (MQ=255) aTCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:14870316/66‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:4777441/68‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:4036249/68‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:4466986/68‑1 (MQ=255) accttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa < 1:26251945‑M1/49‑1 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:1114608/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:5482410/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:2243067/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:16179417/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:20058136/1‑67 (MQ=255) cAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATc > 1:30368722/1‑68 (MQ=255) cAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATc > 1:22213327/1‑68 (MQ=255) gtcgtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTCCGAGAAACAGGAAGGTGGAGTGTGTCg > 1:12762260/1‑67 (MQ=255) tgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCa < 1:12473814‑M1/55‑1 (MQ=255) tgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCa < 1:23444087‑M1/55‑1 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCt < 1:18064365/68‑1 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:12250608/1‑68 (MQ=255) gCCCCATGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAATTGTATCGCCAGCTTTTGCa > 1:3580053/1‑68 (MQ=255) cccTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAAc > 1:27916491/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGTAGTGTATCGCCAGCTTTTGCAAAc < 1:9706245‑M1/67‑1 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAAc < 1:7693563‑M1/67‑1 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACg > 1:21239964‑M1/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACg > 1:9471700‑M1/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTAGCAAAc < 1:22709156‑M1/67‑1 (MQ=255) | CAGCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACG > CP009273/4388328‑4388461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |