| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4388394 = | 379 (0.980) | 18 (0.050) | 11/100 | NT | 5.4% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 294 (0.860) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
Only 100 of 418 total aligned reads displayed.
GCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > CP009273/4388350‑4388482 | gcgcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCt < 1:28187612/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:22841315/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:24520950/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:27030007/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:6809777/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:28478702/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:12324048/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:12676711/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:5319326/68‑1 (MQ=255) cTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAcc > 1:26244906/1‑68 (MQ=255) tACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCa < 1:10938633/68‑1 (MQ=255) acacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAg > 1:20318277/1‑68 (MQ=255) aaaagctggcgatacacttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTACCa < 1:14682683‑M2/6‑1 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTCCCAGaa > 1:15828709/1‑68 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:15561586/1‑68 (MQ=255) cTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:5499525/1‑67 (MQ=255) cTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:29102785/1‑67 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCTAATGCGCAGCCAGGCTACCAGAAACa < 1:25962343/68‑1 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:10244016/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:20018533/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:8371518/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa < 1:1871414/68‑1 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:18044930/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa < 1:17316184/68‑1 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:921134/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa < 1:5938754/68‑1 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCAAATGCGCAGCCAGGCTACCAGAAACa > 1:27859990/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGACCGAATGCGCAGCCAGGCTACCAGAAACa > 1:14190978/1‑68 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc > 1:11616537/1‑68 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc < 1:1772371/68‑1 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc > 1:21958262/1‑68 (MQ=255) cgcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCaa > 1:18999238/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCaa < 1:11954015/67‑1 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:23931743/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:22316605/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:462421/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:19728426/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:29624270/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:30358454/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:31390586/1‑68 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:22498332/67‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:13006439/67‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:1084024/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:2684607/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:25397335/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:24691916/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:10004483/68‑1 (MQ=255) cAGCATCAGGCAGTCGGCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:23479574/68‑1 (MQ=255) cacttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTACCAGAAACAGCAAGGTGa < 1:15310220‑M2/21‑1 (MQ=255) cacttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTACCAGAAACAGCAAGGTGa < 1:4145906‑M2/21‑1 (MQ=255) cacttcaccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:2065065‑M1/43‑1 (MQ=255) cacttcaccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:6398816‑M1/43‑1 (MQ=255) cATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGaa > 1:30092022/1‑68 (MQ=255) cATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGaa > 1:12511294/1‑68 (MQ=255) aTCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:15146088/66‑1 (MQ=255) tCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgt < 1:7879707/68‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:3832511/68‑1 (MQ=255) aGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtgt > 1:9699264/1‑68 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGATTGCGCAGCCAGGCTAGCAGAAACAGCATGGTGAAGTGTa > 1:20972509/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:12886892/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:1114608/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:3169309/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:16179417/1‑67 (MQ=255) ccttgctgtttctggtagCCTGGCCGAATGCGCAGCCCGGCTACCAGCAACGGCATGGTGAAGTGTAt < 1:9047849‑M1/50‑1 (MQ=255) ccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa < 1:25633582‑M1/49‑1 (MQ=255) cAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATc > 1:18185764/1‑68 (MQ=255) aGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATc < 1:16869049/67‑1 (MQ=255) gtcgtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCg > 1:30741158/1‑67 (MQ=255) gctgtttctggtagCCTGGCCGAATGCGCCGCCCGGCTACCAGAGACAGCAAGCTGAAGTGTATCGcc < 1:14437253‑M1/54‑1 (MQ=255) tgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCa < 1:23444087‑M1/55‑1 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGc < 1:12218533/67‑1 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCt > 1:19392600/1‑68 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCt < 1:4421547/68‑1 (MQ=255) ttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCtt < 1:20877788‑M1/59‑1 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:7334516/1‑68 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt < 1:14009830/68‑1 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:2633637/1‑68 (MQ=255) cTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCtttt > 1:3241506/1‑67 (MQ=255) cTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCtttt > 1:4493160/1‑67 (MQ=255) gCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGCAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCa > 1:3541977/1‑68 (MQ=255) cccTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAAc > 1:25213242/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACg > 1:9471700‑M1/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACg > 1:21239964‑M1/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACg > 1:8101014‑M1/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTAGCAAAc < 1:22709156‑M1/67‑1 (MQ=255) CTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGc > 1:31321257‑M1/1‑68 (MQ=255) GGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGccc < 1:8728471‑M1/68‑1 (MQ=255) GGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGccc < 1:23417057‑M1/68‑1 (MQ=255) GCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGccc < 1:24958154‑M1/67‑1 (MQ=255) GCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGccc < 1:13552622‑M1/67‑1 (MQ=255) CCGAATGCGCCGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCcgc < 1:7614512‑M1/68‑1 (MQ=255) ggAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAAcgcgcgcg < 1:21746652/67‑1 (MQ=255) cGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCcgcg < 1:10727655/68‑1 (MQ=255) aaTGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGcc > 1:4048110/1‑68 (MQ=255) tGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGccca > 1:8287780/1‑66 (MQ=255) tGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGa > 1:16402802/1‑68 (MQ=255) ccaggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCaaaa > 1:11866967‑M2/6‑68 (MQ=255) caggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCaaaaa < 1:24169416‑M2/64‑1 (MQ=255) caggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCaaaaa < 1:1492999‑M2/64‑1 (MQ=255) gCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTa > 1:29348240‑M2/2‑68 (MQ=255) | GCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > CP009273/4388350‑4388482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |