| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 281585 = | 195 (0.510) | 9 (0.030) | 6/96 | NT | 5.7% | coding (480/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter |
| ? | CP009273 | 281607 = | 132 (0.400) | coding (502/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter | |||||
Only 100 of 113 total aligned reads displayed.
CACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/281659‑281585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGA > CP009273/281607‑281673 CACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:13031413/1‑68 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:22954713/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT < 1:15381587/67‑1 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:29953500/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:18000135/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:2617233/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:13199834/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:26159887/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT < 1:12503306/67‑1 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:31075972/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:24564632/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:22590508/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:3567037/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:11201897/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:22814481/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:11098052/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:7563759/1‑67 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT < 1:7574022/67‑1 ACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTGTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 1:14216170/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCCGCGGCCGCGCGATG > 1:6880834/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCCGCGCGATG > 1:3358122/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCCGCGCGATG > 1:24357260/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 1:22343783/68‑1 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 1:26597602/68‑1 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 1:10124001/68‑1 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 1:15314494/68‑1 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 1:28691631/68‑1 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 1:11346893/68‑1 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 1:14069208/68‑1 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:23964721/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:4969265/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:3436365/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:11454032/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:13065647/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:26313474/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:26452123/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:16862372/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:26669371/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATG > 1:26937792/1‑67 CATGGCGCCGAAGTAGCCCACCTGCTCGGCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 1:21260400/68‑1 ATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC < 1:30162737/68‑1 ATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC < 1:31502394/68‑1 ATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC > 1:26546094/1‑68 ATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC < 1:25896663/68‑1 ATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC < 1:19281354/68‑1 ATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC < 1:17689659/68‑1 ATGGCGCCGAAGTAGCCCACCTGCTCGGCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC < 1:8244074/68‑1 TGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCG < 1:9482614/68‑1 TGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCG < 1:8225626/68‑1 TGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCG < 1:2831185/68‑1 TGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCG < 1:14578229/68‑1 TGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCG < 1:28963281/68‑1 TGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCG < 1:12146076/68‑1 TGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCG < 1:18274504/68‑1 TGGCGCCGAAGGAGCCCACCTGCTCGACCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCG < 1:27832187/68‑1 GGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC > 1:3237537/1‑66 GGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC > 1:12041959/1‑66 GGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC > 1:10031008/1‑66 GGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC > 1:10224976/1‑66 GGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCC > 1:28513128/1‑66 GGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCAACAGCGGCAGCGCGAAGCC > 1:7782506/1‑66 CGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCT < 1:31132840/67‑1 CGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCT < 1:4955489/67‑1 CGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCT < 1:24339447/67‑1 CGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCT < 1:27425101/67‑1 CGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCT < 1:27195232/67‑1 CGCCGAAGTAGCCCACCTGCGCGTCCCCTTTGCCGATGAAGCTCACCAGCGGCAGCGCGATGCCGCT < 1:21816343/67‑1 GCCGAATTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGG < 1:31655067/68‑1 GCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGG < 1:14351185/68‑1 GCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGG < 1:26746752/68‑1 GCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGG < 1:6732574/68‑1 CACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCG < 1:11383561/68‑1 CACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCG < 1:20428670/68‑1 ACCTGCTCGGCCCCTATGCCGATGATGCGCACCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGG < 1:14928983/68‑1 ACCTGCTCGCCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCGGGTGAGCATCATCGG < 1:24641408/68‑1 CCTCCTCGCCCCCTTTGCCGATGATCCTCACCAGCGGCAGCGCGAGGCCGCTGGTGAGCATCATCGGC < 1:1117109/68‑1 CCCTTTGCCGATGATGCCCCCCCGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACG < 1:2732991/68‑1 GGCAGCGCGATGCCGCTGGTGCGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAT > 1:17953432/1‑68 GGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAT > 1:28541318/1‑68 AGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGT < 1:6674339/67‑1 CCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTG < 1:642321/63‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:10839812/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:25563031/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:7770852/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG > 1:6369758/1‑67 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:6071792/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:24166405/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:3782804/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:3131252/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:31304708/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:30808451/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:30221030/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:1424444/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:27236832/67‑1 CGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGGGGGCTACTTCGGCGCCATGTGCGTGCTGGG < 1:11336610/67‑1 GCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGC < 1:15901315/68‑1 GCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGC < 1:10338832/68‑1 GCTGGTGAGCATCATCCGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCATGCTGGGGC < 1:11365069/68‑1 GGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGA < 1:19632851/68‑1 GGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGA < 1:15900510/68‑1 CACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/281659‑281585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGA > CP009273/281607‑281673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |