New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 281585 =195 (0.510)9 (0.030) 6/96 NT 5.7% coding (480/1383 nt) yagG CP4‑6 prophage; putative sugar transporter
?CP009273 281607 = 132 (0.400)coding (502/1383 nt) yagG CP4‑6 prophage; putative sugar transporter

Only 100 of 306 total aligned reads displayed.

GCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGA  >  CP009273/281540‑281673
                                                                   |                                                                  
gCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg                                                                    <  1:20338681/68‑1 (MQ=255)
gCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg                                                                    <  1:2880532/68‑1 (MQ=255)
gCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg                                                                    <  1:26805855/68‑1 (MQ=255)
gCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg                                                                    <  1:23561952/68‑1 (MQ=255)
  aGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGt                                                                   >  1:27157058/1‑67 (MQ=255)
  aGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTg                                                                  >  1:22050647/1‑68 (MQ=255)
  aGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTg                                                                  >  1:3711684/1‑68 (MQ=255)
     ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGa                                                                 <  1:30327340/66‑1 (MQ=255)
     ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGa                                                                 <  1:3795789/66‑1 (MQ=255)
     ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAg                                                                <  1:26310487/67‑1 (MQ=255)
     ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGc                                                               >  1:2777938/1‑68 (MQ=255)
     ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGc                                                               >  1:31119582/1‑68 (MQ=255)
     ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGc                                                               >  1:14915687/1‑68 (MQ=255)
     ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGc                                                               >  1:4353406/1‑68 (MQ=255)
      cTGGCGCTTCTTCCTGACGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGca                                                              <  1:20433222/68‑1 (MQ=255)
       tGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGca                                                              >  1:28986135/1‑67 (MQ=255)
        ggCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatc                                                            <  1:5293301/68‑1 (MQ=255)
          cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca                                                           >  1:13872032/1‑67 (MQ=255)
          cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca                                                           >  1:2269360/1‑67 (MQ=255)
          cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca                                                           >  1:2231492/1‑67 (MQ=255)
            cttcttCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCg                                                        >  1:6296361/1‑68 (MQ=255)
            cacctgctcgtcccctttgccgatgatgctcaccagcggcagcgcgatgccgctgGTGAGCATCATCg                                                        <  1:11383561‑M2/13‑1 (MQ=255)
               cttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCa                                                     <  1:2500493/68‑1 (MQ=255)
                ttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCaa                                                    <  1:11738039/68‑1 (MQ=255)
                   cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg                                                 <  1:6206444/68‑1 (MQ=255)
                   cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg                                                 >  1:19350118/1‑68 (MQ=255)
                   cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg                                                 <  1:29741594/68‑1 (MQ=255)
                   cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg                                                 <  1:18493428/68‑1 (MQ=255)
                   cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg                                                 <  1:8604772/68‑1 (MQ=255)
                    tGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAggg                                                <  1:13334536/68‑1 (MQ=255)
                    tGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAggg                                                <  1:8883562/68‑1 (MQ=255)
                    tGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAggg                                                <  1:17361405/68‑1 (MQ=255)
                      gcggcggcgGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgggg                                               >  1:3201573/1‑67 (MQ=255)
                      gcggcggcgGGCTCGCTCGCTACCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgggg                                               >  1:3183340/1‑67 (MQ=255)
                          cggcggGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGa                                           <  1:30764426/67‑1 (MQ=255)
                             cggGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCa                                        <  1:941770/67‑1 (MQ=255)
                                  tcgctcgcTATCTGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg                                  <  1:20962403/68‑1 (MQ=38)
                                  tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg                                  <  1:21867402/68‑1 (MQ=255)
                                  tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg                                  <  1:17710658/68‑1 (MQ=255)
                                  tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg                                  <  1:16466240/68‑1 (MQ=255)
                                  tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg                                  <  1:5988201/68‑1 (MQ=255)
                                  tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTgg                                   <  1:28223912/67‑1 (MQ=255)
                                  tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTgg                                   <  1:19005649/67‑1 (MQ=255)
                                      tcgctATCAGCGGCATCGCGCTGCGGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCt                                >  1:21711247/1‑66 (MQ=255)
                                      tcgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCt                                >  1:30922488/1‑66 (MQ=255)
                                      tcgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCt                                >  1:11133171/1‑66 (MQ=255)
                                      tcgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTAc                              <  1:11471165/68‑1 (MQ=255)
                                       cgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACt                             <  1:7131914/68‑1 (MQ=255)
                                        gctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACt                             >  1:10145415/1‑67 (MQ=255)
                                           aTCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCgg                         <  1:28622933/68‑1 (MQ=255)
                                           aTCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCgg                         <  1:16978699/68‑1 (MQ=255)
                                           aTCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCgg                         <  1:12316042/68‑1 (MQ=255)
                                              aGCGGCATCGCGCTGCCGCGGGTGAGCTTCATCGGCAAAGGGGACGATCAGGTGGGCTACTTCGgcg                       >  1:2993743/1‑67 (MQ=255)
                                              AGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGgcg                       <  1:24339447‑M1/67‑1 (MQ=255)
                                                CGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCa                    <  1:18274504‑M1/68‑1 (MQ=255)
                                                CGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCa                    <  1:14578229‑M1/68‑1 (MQ=255)
                                                CGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCa                    <  1:4931746‑M1/68‑1 (MQ=255)
                                                 ggcagcgcgatgccgctgGTGCGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAt                   >  1:17953432‑M2/19‑68 (MQ=255)
                                                 GGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGCCGAGCAGGTGGGCTACTTCGGCGCCAt                   <  1:8244074‑M1/68‑1 (MQ=255)
                                                 GGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGcc                     >  1:10031008‑M1/1‑66 (MQ=255)
                                                 GGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAt                   <  1:30162737‑M1/68‑1 (MQ=255)
                                                 GGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAt                   <  1:31502394‑M1/68‑1 (MQ=255)
                                                  GCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtg                  <  1:11346893‑M1/68‑1 (MQ=255)
                                                  GCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtg                  <  1:14069208‑M1/68‑1 (MQ=255)
                                                   CATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtg                  >  1:13065647‑M1/1‑67 (MQ=255)
                                                   CATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtg                  >  1:16862372‑M1/1‑67 (MQ=255)
                                                   CATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtg                  >  1:23964721‑M1/1‑67 (MQ=255)
                                                   CATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtg                  >  1:26669371‑M1/1‑67 (MQ=255)
                                                   CATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtg                  >  1:26452123‑M1/1‑67 (MQ=255)
                                                   CATCGCGCGGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtg                  >  1:3358122‑M1/1‑67 (MQ=255)
                                                    agcgcgatgccgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 <  1:6674339‑M2/52‑1 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 >  1:24564632‑M1/1‑67 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 <  1:12503306‑M1/67‑1 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 >  1:11201897‑M1/1‑67 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 >  1:7563759‑M1/1‑67 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 <  1:15381587‑M1/67‑1 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 >  1:9703758‑M1/1‑67 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 <  1:313108‑M1/67‑1 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 >  1:26159887‑M1/1‑67 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 >  1:22954713‑M1/1‑67 (MQ=255)
                                                    ATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt                 >  1:22590508‑M1/1‑67 (MQ=255)
                                                       gcgcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTGCGGCGCCCTgtgcgt             >  1:6815696/1‑68 (MQ=255)
                                                         gcTGCCGCTGGTGATCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:28404644/67‑1 (MQ=255)
                                                         gcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:15071772/67‑1 (MQ=255)
                                                         gcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:24648488/67‑1 (MQ=255)
                                                         gcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:26029914/67‑1 (MQ=255)
                                                         gcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:8092287/67‑1 (MQ=255)
                                                         gcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:27411305/67‑1 (MQ=255)
                                                         gcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:2085557/67‑1 (MQ=255)
                                                         gcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:29561583/67‑1 (MQ=255)
                                                         gcTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtg            <  1:16019104/67‑1 (MQ=255)
                                                              cgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTggg       >  1:6369758‑M2/6‑67 (MQ=255)
                                                              cgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTggg       <  1:7770852‑M2/62‑1 (MQ=255)
                                                              cgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTggg       <  1:1424444‑M2/62‑1 (MQ=255)
                                                              cgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTggg       <  1:10839812‑M2/62‑1 (MQ=255)
                                                              cgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTggg       <  1:25563031‑M2/62‑1 (MQ=255)
                                                               gctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGc     <  1:15901315‑M2/64‑1 (MQ=255)
                                                                  gGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGa  <  1:27249848‑M2/67‑1 (MQ=255)
                                                                   gTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGa  >  1:10440135/1‑67 (MQ=255)
                                                                   gTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGa  >  1:15676201/1‑67 (MQ=255)
                                                                   |                                                                  
GCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGA  >  CP009273/281540‑281673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.