| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 281585 = | 195 (0.510) | 9 (0.030) | 6/96 | NT | 5.7% | coding (480/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter |
| ? | CP009273 | 281607 = | 132 (0.400) | coding (502/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter | |||||
Only 100 of 242 total aligned reads displayed.
ACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGC > CP009273/281518‑281651 | tcagccccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacc < 1:27249848‑M1/1‑1 (MQ=255) cccGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCa < 1:2659189/68‑1 (MQ=255) gccccagcatgcacatggcgccgaagtagcccacctgctcgtcccctttgcggatgatgctcacCAGc < 1:11365069‑M1/4‑1 (MQ=255) gccccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGc < 1:15901315‑M1/4‑1 (MQ=255) cGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGc < 1:15406300/68‑1 (MQ=255) cccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCg < 1:10839812‑M1/5‑1 (MQ=255) cccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCg < 1:30808451‑M1/5‑1 (MQ=255) cccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCg < 1:3131252‑M1/5‑1 (MQ=255) cccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCg < 1:754406‑M1/5‑1 (MQ=255) cccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCg < 1:3782804‑M1/5‑1 (MQ=255) aaGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGc < 1:30155634/68‑1 (MQ=255) aaGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGc < 1:5670854/68‑1 (MQ=255) agagCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCa > 1:17191356/1‑68 (MQ=255) agagCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCa < 1:13592298/68‑1 (MQ=255) gagCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCa > 1:10325158/1‑67 (MQ=255) gagCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCa > 1:31392743/1‑67 (MQ=255) cacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCgg < 1:642321‑M1/6‑1 (MQ=255) cGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATcgc > 1:18418856/1‑68 (MQ=255) gTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATcgc < 1:14851984/67‑1 (MQ=255) gTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATcgc > 1:9437798/1‑67 (MQ=255) gTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATcgc < 1:12600925/67‑1 (MQ=255) acatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCGGCATCGCGCt < 1:6674339‑M1/15‑1 (MQ=255) gCCCTGCAGTCCTGTCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGcc < 1:8463820/68‑1 (MQ=255) gCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGcc < 1:14076578/68‑1 (MQ=255) gCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGcc < 1:8860895/68‑1 (MQ=255) gCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGcc < 1:2486033/68‑1 (MQ=255) gCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGcc < 1:7923822/68‑1 (MQ=255) atggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCGGCATCGCGCTGcc > 1:28541318‑M1/51‑68 (MQ=255) atggcgccgaagtagcccacctgctcgtcccctttgccgatgatgcgcacCAGCGGCATCGCGCTGcc > 1:17953432‑M1/51‑68 (MQ=255) ccTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGcc > 1:15883457/1‑66 (MQ=255) ccTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCg < 1:3467320/67‑1 (MQ=255) gCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg > 1:25488100/1‑68 (MQ=255) gCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg < 1:20338681/68‑1 (MQ=255) gCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg < 1:20953908/68‑1 (MQ=255) aGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGt > 1:27157058/1‑67 (MQ=255) aGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTg > 1:3711684/1‑68 (MQ=255) aGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTg > 1:5104877/1‑68 (MQ=255) aGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTg > 1:22050647/1‑68 (MQ=255) ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGa < 1:2896197/66‑1 (MQ=255) ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGa < 1:13882930/66‑1 (MQ=255) ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGa < 1:30327340/66‑1 (MQ=255) ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGc > 1:2777938/1‑68 (MQ=255) ccTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGc > 1:31119582/1‑68 (MQ=255) cTGGCGCTTCTTCCTGACGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGca < 1:20433222/68‑1 (MQ=255) ggCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatc < 1:5293301/68‑1 (MQ=255) cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca > 1:2269360/1‑67 (MQ=255) cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca > 1:2231492/1‑67 (MQ=255) cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca > 1:23725404/1‑67 (MQ=255) cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca > 1:21695321/1‑67 (MQ=255) cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca > 1:2609644/1‑67 (MQ=255) cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca > 1:4052927/1‑67 (MQ=255) cgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca > 1:4466409/1‑67 (MQ=255) cttcttCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCg > 1:6296361/1‑68 (MQ=255) cttcttCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCg > 1:3190640/1‑68 (MQ=255) ttcttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCg < 1:22640173/67‑1 (MQ=255) ttcttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCg < 1:18354577/67‑1 (MQ=255) tcttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGc < 1:8247295/68‑1 (MQ=255) tcttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGc < 1:9724120/68‑1 (MQ=255) tcttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGc < 1:16098630/68‑1 (MQ=255) cttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCa < 1:26962301/68‑1 (MQ=255) cttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCa < 1:2500493/68‑1 (MQ=255) ttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCaa < 1:25198216/68‑1 (MQ=255) ttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCaa < 1:12323221/68‑1 (MQ=255) ttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCaa < 1:11738039/68‑1 (MQ=255) tcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCaaa > 1:10442048/1‑68 (MQ=255) cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg < 1:29706809/68‑1 (MQ=255) cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg < 1:29741594/68‑1 (MQ=255) cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg < 1:6206444/68‑1 (MQ=255) cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg < 1:29334386/68‑1 (MQ=255) cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg > 1:19350118/1‑68 (MQ=255) cTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg < 1:17724234/68‑1 (MQ=255) tGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAggg < 1:8883562/68‑1 (MQ=255) tGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAggg < 1:17361405/68‑1 (MQ=255) gcggcggcgGGCTCGCTCGCTACCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgggg > 1:3183340/1‑67 (MQ=255) ggcggcggGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACg > 1:2899125/1‑68 (MQ=255) gcggcggGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGa > 1:6252385/1‑68 (MQ=255) cggcggGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGa < 1:30271733/67‑1 (MQ=255) ggcggGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCTTCATCGGCAAAGGGGACGAGc < 1:20640060/68‑1 (MQ=255) cggGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCa < 1:13329253/67‑1 (MQ=255) gggCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAg < 1:19907358/67‑1 (MQ=255) ccgatgatgctcacCCGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGGCGAGCAGGt < 1:24641408‑M1/54‑1 (MQ=255) ccgatgatgctcacCAGCGGCATCGCGCTGCCGCTGGTGCGCATCATCGGCATAGGGGCCGAGCAGGt < 1:14928983‑M1/54‑1 (MQ=255) gctcgctcGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGt < 1:10056469/67‑1 (MQ=255) gctcgctcGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGt < 1:28083785/67‑1 (MQ=255) gctcgctcGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGt < 1:23445729/67‑1 (MQ=255) gctcgcgcGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGt < 1:17298589/67‑1 (MQ=255) tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggt < 1:30647596/68‑2 (MQ=255) tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg < 1:16466240/68‑1 (MQ=255) tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg < 1:5988201/68‑1 (MQ=255) tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg < 1:1461352/68‑1 (MQ=255) tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg < 1:21867402/68‑1 (MQ=255) tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg < 1:28788397/68‑1 (MQ=255) tcgctcgcTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTgg < 1:16917057/67‑1 (MQ=255) tcgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCt > 1:11133171/1‑66 (MQ=255) tcgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTAc < 1:11471165/68‑1 (MQ=255) cgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACt < 1:7131914/68‑1 (MQ=255) cgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACt < 1:18836608/68‑1 (MQ=255) cgctATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACt < 1:11440670/68‑1 (MQ=255) aTCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCgg < 1:16978699/68‑1 (MQ=255) cCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGgc < 1:14351185‑M1/67‑1 (MQ=255) | ACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGC > CP009273/281518‑281651 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |