| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 447701 = | 337 (0.880) | 17 (0.050) | 9/96 | NT | 6.0% | coding (1301/1476 nt) | ampG | muropeptide transporter |
| ? | CP009273 | 447798 = | 246 (0.750) | coding (1204/1476 nt) | ampG | muropeptide transporter | |||||
CGAGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/447774‑447701‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggcAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAGC > CP009273/447798‑447863 CGAGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACT < 1:28724598/68‑1CGAGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACT < 1:4159328/68‑1CGAGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACT < 1:4782427/68‑1CGAGTAAATGACAACTTTATCTCCAGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACa > 1:27310429/1‑67CGAGTAAATGACAACTATATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACT < 1:20476694/68‑1 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:20598639/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:29637557/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:29599776/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:2905484/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:28946596/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:31314814/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:4126311/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:24138742/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:18983002/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:13695624/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTG > 1:10805881/1‑67 AGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTAGCCATGTGGACACTG > 1:24146836/1‑67 GTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGC > 1:11980916/1‑68 GTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGG < 1:15323682/67‑1 GTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGG < 1:11875248/67‑1 GTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGG < 1:1997565/67‑1 TAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCG > 1:8963339/1‑68 AAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCG < 1:4154357/67‑1 AAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCG > 1:14276511/1‑67 AAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCG < 1:13196585/67‑1 AAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCG > 1:2417109/1‑67 ATGACAACTTAATCTCCCGTACCGCATATCCGGCAGGTTATGCCGTTGCCATGTGGACACTGGCGGCA < 1:25638910/68‑1 GACAACTTTATCTCCCGTACCGCATCTCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAA < 1:5211959/68‑1 GACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAA < 1:20770116/68‑1 AACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCA < 1:25631018/68‑1 TTTATCTCCCGCACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCAGCA < 1:11637672/68‑1 TATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGTCATGTGGACACTGGCGGCAAACCAGCAGC < 1:18819781/68‑1 TATCTCCCGAACCGCATATCCGGCAGGTTATGCCTTTGCCATGGGGACACTGGCGGCAAACCAGCAGC < 1:13842630/68‑1 cTCTCCCGTACCGCATCACCTGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCAGCAGCA < 1:14257944/67‑1 CTCCCGTCCCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCAGCAGCAAA < 1:26984512/68‑1 CTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCAGCAGCAAA < 1:21854997/68‑1 CTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCAGCAGCAAA < 1:9575263/68‑1 CTCCCGTACCGCAAAACCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCAGCAGCAAA < 1:1374663/68‑1 GTACCGCATATCCGGCCCGTTATGCCATTGCCATGGCGACACTGGCGGCAAACCAGCAGCAAAATAAG < 1:10460724/68‑1 GTACCGCAAATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCAGCAGCAAAATAAG < 1:21288479/68‑1 ACCGCCTACCCGCCAGGTTATGCCTTTGCCATGTCGACACCGGCGGCAAACCAGCAGCAAAATAAGCC < 1:278343/68‑1 ACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGCAAACCAGCAGCAAAATAAGC < 1:1038445/67‑1 ACCGCATACCCGGCCGGTTATGCCTTTCCCAGGTGGACCCTGGCGGCAAACCAGCAGCAAAATAAGC < 1:7085474/67‑1 cCATACCCGGCAGGTTATGCCTTGGCCATGTGGACCCTGGCGGCAAACCAGCAGCAAAATAAGCCCTG < 1:9176511/67‑1 cCATACCCGCCAGGTTATGCCTTTGCCAGGTGCACACTGGCGGCAAACCAGCAGCAAAATAAGCCCTG < 1:11054339/67‑1 GCATACCCGGCAGGTAATGCCTTTGCCATGCGGCCCCGGGCGGCAAACCAGCAGCAAAATAAGCCCTG < 1:23119507/68‑1 GCGGCAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACC > 1:31970687/1‑68 GCAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAG > 1:30049420/1‑67 GCAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAG > 1:24167545/1‑67 GCAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAG > 1:21106154/1‑67 GCAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAG > 1:9189809/1‑67 CAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAGC < 1:29726387/67‑1 CAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAGC < 1:1217812/67‑1 CAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAGC < 1:8369906/67‑1 CGAGTAAATGACAACTTTATCTCCCGTACCGCATATCCGGCAGGTTATGCCTTTGCCATGTGGACACTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/447774‑447701‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggcAAACCAGCAGCAAAATAAGCCCTGGTACGGCAGCGGCGACGGAGAATAGATAGAATGTCGACCAGC > CP009273/447798‑447863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |