New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 678193	121 (0.310)	12 (0.040)	7/94	NT	10.3%	coding (657/1671 nt)	hscC	Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription
	?	CP009273	= 678254	108 (0.330)					coding (596/1671 nt)	hscC	Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription

TTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/678119‑678193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgacaACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATGTCG  <  CP009273/678254‑678189                                                                                                                                               TTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCC                                                                            <  1:18404909/67‑1   GCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGG                                                                         <  1:11391410/68‑1   GCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGG                                                                         <  1:3163921/68‑1   GCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGG                                                                         <  1:14093995/68‑1   GCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGG                                                                         <  1:14119506/68‑1   GCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGG                                                                         <  1:17001932/68‑1   GCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGG                                                                         <  1:4130838/68‑1      ACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCG                                                                       >  1:24898968/1‑67      ACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCG                                                                       >  1:375950/1‑67        ATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACA                                                                    >  1:11248476/1‑68        ATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACA                                                                    >  1:10517511/1‑68                           GGCGTACAAGGCTGCCAGTTCACGCTCGTTAAGCGTGGTCCTGGCGGCAACCTTCGTGGGGGCGAAGA                                                 >  1:8576413/1‑68                                  AAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGGGGCAACGTTGGTGGGGGCGAAGATTTTAC                                           >  1:2507818/1‑67                                     GCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACCACTTTCTTGGTGGCGAAGAGTTTACCCAT                                       >  1:14784948/1‑68                                     GCTGCCAGTTCACTCTCGTTAAGCGTGGTCCGGGCGGCGACTTTCTTGGTGGCGAAGAATTTTCCgcg                                       >  1:7936802/1‑65                                                   CTCGTTAAGCGTGGTCCTGGCGCCAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGA                         >  1:29032970/1‑68                                                   CTCGTTAAGCGTGGTCCTGGCGACAACTTTGTTGGTGGCGAAGATTTTACGCATATGCTGGTCGATGA                         >  1:25884937/1‑68                                                        TAAGCGTGGTCCTGGCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTT                    >  1:18131936/1‑68                                                          AGCGTGGTCCTGGCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTA                  >  1:14144820/1‑68                                                            CGTGGTCCTGGCGACAACTTTGTTGGTGGCGAAGATTTTACCCATAGGCTGGTCGATGAGGTTTTAAA                >  1:30175108/1‑68                                                            CGTGGTCCTGGCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAA                >  1:12723951/1‑68                                                            CGTGGTCCTGGCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAA                >  1:5272519/1‑68                                                            CGTGGTCCTGGCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAA                >  1:23296696/1‑68                                                                    TGGCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGG        >  1:16832704/1‑68                                                                    TGGCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGG        >  1:28590010/1‑68                                                                     GGCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGA       <  1:28900420/68‑1                                                                      GCGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGAT      >  1:24428221/1‑68                                                                       CGACCACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATG     >  1:26590990/1‑68                                                                       CGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATTAGGTTTTAAAACGCGCGGATG     >  1:308318/1‑68                                                                       CGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATG     >  1:30390567/1‑68                                                                       CGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATG     >  1:30495023/1‑68                                                                       CGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATG     >  1:27023060/1‑68                                                                       CGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATG     >  1:26604084/1‑68                                                                       CGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATG     >  1:24027859/1‑68                                                                       CGACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATG     >  1:9397003/1‑68                                                                         ACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATGTC   >  1:18355042/1‑68                                                                         ACAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATGTC   >  1:24920716/1‑68                                                                          CAACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATGTCG  <  1:29346516/68‑1                                                                                                                                               TTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/678119‑678193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgacaACTTTCTTGGTGGCGAAGATTTTACCCATATGCTGGTCGATGAGGTTTTAAAACGCGCGGATGTCG  <  CP009273/678254‑678189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.