| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 678193 | 121 (0.310) | 12 (0.040) | 7/94 | NT | 10.3% | coding (657/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
| ? | CP009273 | = 678254 | 108 (0.330) | coding (596/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription | |||||
Only 100 of 144 total aligned reads displayed.
GGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACG > CP009273/678187‑678320 | ggCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGt < 1:12134420/68‑1 (MQ=255)ggCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGt < 1:24752518/68‑1 (MQ=255)ggCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGt < 1:18326083/68‑1 (MQ=255) cGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtg < 1:29346516‑M2/68‑3 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:9397003‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:30495023‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:27023060‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:26604084‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:24027859‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTggtcg > 1:26590990‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTAATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:308318‑M2/1‑63 (MQ=255) aTCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgc > 1:24428221‑M2/1‑62 (MQ=255) tCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgcc < 1:28900420‑M2/68‑8 (MQ=255) ccGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgcca > 1:16832704‑M2/1‑60 (MQ=255) ccGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgcca > 1:28590010‑M2/1‑60 (MQ=255) gcgTTTTAAAACCTCATCGACCAGCATGTGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCgg > 1:4185924/1‑68 (MQ=255) tttAAAACCTCATCGACCAGCCTATGGGTAAAATCTTCGCCACCAACAAAGTtgtcgccaggaccacg > 1:30175108‑M2/1‑52 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacg > 1:5272519‑M2/1‑52 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacg > 1:23296696‑M2/1‑52 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacg > 1:12723951‑M2/1‑52 (MQ=255) tAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacgct > 1:14144820‑M2/1‑50 (MQ=255) aaaCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGa < 1:5037246/68‑1 (MQ=255) aCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGa > 1:30104855/1‑66 (MQ=255) aCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAAc < 1:29317357/68‑1 (MQ=255) cctcctCGACCAGCATATGCGTAAAATCTTCGCCACCAAGAAAGGTGTCGCCAGCGGAGGCGTGAACt < 1:5993769/68‑1 (MQ=255) ccTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACt < 1:17896842/68‑1 (MQ=255) tCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtggcgccaggaccacgcttaacgag > 1:29032970‑M2/1‑43 (MQ=255) tCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTc < 1:18183781/68‑1 (MQ=255) tCATCGACCAGCATATGCGTAAAATCTTCGCCACCAACAAAGTtgtcgccaggaccacgcttaacgag > 1:25884937‑M2/1‑43 (MQ=255) aTCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCaa < 1:18834551/68‑1 (MQ=255) gACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCa < 1:22576549/68‑1 (MQ=255) ccAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCAcc > 1:17008728/1‑68 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggc < 1:8354594/66‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:10464401/65‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:1445309/65‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:5924715/65‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:6580388/65‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:21893410/68‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:3813860/68‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:16504925/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCTAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:25879354/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:25489980/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:19818015/68‑1 (MQ=255) ggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt > 1:21439708/1‑68 (MQ=255) ggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt > 1:2704970/1‑68 (MQ=255) gTAAAATCTTCGCCCCCACCAACGTtgcccccaggaccacgcttaacgagagtgaactggcagcctt > 1:2507818‑M2/1‑25 (MQ=255) gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt < 1:20059944/67‑1 (MQ=255) gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt < 1:4342431/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:27895655/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:13540036/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:14545185/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:31447254/67‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAATTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:7897299/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:30561037/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:31162091/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:31697007/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:25926321/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:11782034/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:31388446/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:1358843/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:13643584/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:14280631/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:7931839/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:18542472/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:18902451/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:18942204/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:19857469/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:20719984/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:7375917/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:22059075/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:5955805/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:22683414/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:24221089/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGGCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:2084372/68‑1 (MQ=255) aTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCaa > 1:24732245/1‑68 (MQ=255) tCTTCGCCCCCACGAAGGTtgccgccaggaccacgcttaacgagcgtgaactggcagccttgtacgcc > 1:8576413‑M2/1‑19 (MQ=255) tCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCaa > 1:12677991/1‑67 (MQ=255) tCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAg < 1:29182004/68‑1 (MQ=255) tCTTCGCCACCAAGAAAGTTGGCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAg < 1:3568996/68‑1 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:25734786/68‑1 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:2912317/68‑1 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:28053309/68‑1 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:21087461/68‑1 (MQ=255) tCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAc < 1:14970788/68‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:31966278/68‑1 (MQ=255) ccaccaAGAAAGTTGTCGACAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGt > 1:11171417/1‑68 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCa > 1:25204541/1‑62 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:10585386/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:13986009/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:21047616/68‑1 (MQ=255) ccaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAAc < 1:12082868/68‑1 (MQ=255) ccaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAAc < 1:10799982/68‑1 (MQ=255) caAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACg < 1:22125061/68‑1 (MQ=255) caAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACg < 1:13365184/68‑1 (MQ=255) caAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACg < 1:18342123/68‑1 (MQ=255) caAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACg < 1:17943482/68‑1 (MQ=255) caAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACg < 1:813185/68‑1 (MQ=255) aaGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGt < 1:22835255/68‑1 (MQ=255) aaGAAAGTTGTCGCCAGCGGACGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGt < 1:21631845/68‑1 (MQ=255) gTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACg > 1:12690757/1‑68 (MQ=255) | GGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACG > CP009273/678187‑678320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |