| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1039965 | 240 (0.620) | 12 (0.040) | 6/98 | NT | 5.2% | coding (168/447 nt) | etp | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P |
| ? | CP009273 | = 1039970 | 225 (0.670) | coding (163/447 nt) | etp | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P | |||||
CGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1039892‑1039965‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcaGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCTGAGATG < CP009273/1039970‑1039905 CGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTA > 1:317061/1‑68 GTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAG < 1:26847433/68‑1 GTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAG < 1:14502571/68‑1 AATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG < 1:5804776/68‑1 AATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG < 1:3619316/68‑1 AATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG < 1:31248756/68‑1 AATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG < 1:29346120/68‑1 AATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG < 1:24958633/68‑1 ATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGG < 1:2215507/68‑1 ATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG > 1:24910339/1‑67 ATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG > 1:4164043/1‑67 ATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG > 1:19098625/1‑67 ATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCG > 1:1554310/1‑67 ATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCAAGTCCGTCAAGAGATACGCGATGATTAGCG > 1:18690080/1‑67 TTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGC < 1:5978309/68‑1 aTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCATTAAAGAGATACGCCATGATTAGCTGCA > 1:28911077/2‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:17669854/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:27297151/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:282690/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:7489515/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:5849860/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:3652594/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:10988743/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:21554636/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:19422118/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:7666994/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:17381954/1‑68 TTCGTGCCATCTCAGCAGTGAGCTTACGTCAGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:5757303/1‑68 TCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAGATGTTGCCGCGAATGATGGCGTATC > 1:13049589/1‑66 TGTCCTTCAAGAGATACGCCATGATTAGCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGG > 1:30239777/1‑68 AAGAGATACGCCATGATTAGCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCG > 1:27910579/1‑68 AGAGATACGCCATGATTAGCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGG > 1:26137477/1‑68 AGATACGCCATGATTAGCGGCTGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGAC > 1:27833337/1‑68 AGATACGCCATGATTAGCGGCAGATGTTGCGGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGgc > 1:25270953/1‑66 AGATACGCCATGATTAGCGGCAGATGTTGCCGCTAATCATGGCGTTTCTCTTGAAGGACATGCCGGgc > 1:9409027/1‑66 AGATACGCCATGATTAGCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGAC > 1:23447256/1‑68 AGATACGCCATGATTAGCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGAC > 1:18070974/1‑68 CCATGATTAGCGGCAGATGTTGCCGCTAATCTTGGCGTATCTCTTGAAGGACATGCCGGACGTAA > 1:27346261/1‑65 CCATGATTAGCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGC > 1:26612528/1‑67 CCATGATTAGCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGC > 1:28937943/1‑67 GCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCTGA > 1:11675801/1‑68 GCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCTGA > 1:15632662/1‑68 GCGGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCTGA > 1:20149310/1‑68 GGCAGATGTTGCCGCTAGTCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:24824414/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGATATGCCGGACGTAAGCTCACTGC < 1:30176200/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCTGAGA > 1:25853052/1‑68 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCTGAG < 1:13555803/67‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCT < 1:13264019/64‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:10488591/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:7989216/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:7634695/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:3139505/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:23682343/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:21950369/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:1712456/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:12053490/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGC < 1:10282768/63‑1 GGCAGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATACCGGACGTAAGCTCACTGCTGAGA > 1:25863687/1‑68 AGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCTGAGATG > 1:7029420/1‑67 CGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1039892‑1039965‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcaGATGTTGCCGCTAATCATGGCGTATCTCTTGAAGGACATGCCGGACGTAAGCTCACTGCTGAGATG < CP009273/1039970‑1039905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |