| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1039965 | 240 (0.620) | 12 (0.040) | 6/98 | NT | 5.2% | coding (168/447 nt) | etp | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P |
| ? | CP009273 | = 1039970 | 225 (0.670) | coding (163/447 nt) | etp | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P | |||||
Only 100 of 286 total aligned reads displayed.
CATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGACTTTTACGCCC > CP009273/1039905‑1040037 | tctcAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc > 1:25853052‑M2/1‑64 (MQ=255) ctcAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc < 1:13555803‑M2/67‑5 (MQ=255) gcagTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc < 1:10488591‑M2/63‑5 (MQ=255) gcagTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc < 1:1712456‑M2/63‑5 (MQ=255) gcagTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc < 1:7634695‑M2/63‑5 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:10024840/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:26440483/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:31040537/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:30634998/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:30284026/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:22361894/1‑67 (MQ=255) gTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGc > 1:16663639/1‑68 (MQ=255) tGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa > 1:10313939/1‑68 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCg < 1:9009142/65‑1 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCg < 1:20344655/65‑1 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCg < 1:7301623/65‑1 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa < 1:29940299/67‑1 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa < 1:14138377/67‑1 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa < 1:19528624/67‑1 (MQ=255) gCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgccgctaatcatgg > 1:26612528‑M2/1‑52 (MQ=255) gCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa > 1:883076/1‑65 (MQ=255) gCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATc < 1:22884693/67‑1 (MQ=255) gCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATc < 1:29267650/67‑1 (MQ=255) ttACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCt < 1:2395718/66‑1 (MQ=255) ttACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGc < 1:2606474/68‑1 (MQ=255) ttACGTCCGGCATGTCCTTCAAGAGATACGCCAAGATTAGCGGCAACATCtgccgctaatcatgg > 1:27346261‑M2/1‑50 (MQ=255) tACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCa > 1:22632948/1‑68 (MQ=255) tACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCa > 1:20159790/1‑68 (MQ=255) cGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAgg > 1:9168739/1‑68 (MQ=255) cGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAgg > 1:12581701/1‑68 (MQ=255) cGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAgg > 1:7713556/1‑68 (MQ=255) cGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAgg > 1:27908768/1‑68 (MQ=255) cGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATATGCCGCTGTAGCATCTGCAgg > 1:5928163/1‑68 (MQ=255) gcccggCATGTCCTTCAAGAGAAACGCCATGATTAGCGGCAACATCtgccgctaatcatggcgtatct > 1:9409027‑M2/3‑46 (MQ=255) gTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgccgctaatcatggcgtatct > 1:18070974‑M2/1‑46 (MQ=255) tCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgt > 1:6943700/1‑68 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:6632435/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:24416185/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:2965824/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:23788744/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:23560079/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:32003433/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:30354926/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:6450536/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:11835432/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:14951723/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:15182744/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:15372579/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:15974024/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:18973213/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:19142698/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:21599210/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:21210258/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgt < 1:25009619/67‑1 (MQ=255) ccGGCATGGCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgt < 1:12235991/67‑1 (MQ=255) aTGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGtttt < 1:27010205/67‑1 (MQ=255) aTGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGtttt < 1:13799250/67‑1 (MQ=255) aTGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGtttt < 1:18656144/67‑1 (MQ=255) aTGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGtttt < 1:11668949/67‑1 (MQ=255) tGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTa > 1:15501620/1‑67 (MQ=255) ccTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCg < 1:23117140/46‑1 (MQ=255) ccTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAg > 1:9602673/1‑68 (MQ=255) ccTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAg > 1:5088113/1‑68 (MQ=255) cTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAg > 1:27462265/1‑67 (MQ=255) cTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAg > 1:20545958/1‑67 (MQ=255) cTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAg > 1:22014669/1‑67 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:22817794/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:13152717/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:442870/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:16790123/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:19350719/68‑1 (MQ=255) cAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCa < 1:3345153/68‑1 (MQ=255) cAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCa < 1:8020881/68‑1 (MQ=255) cAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCa < 1:25194582/68‑1 (MQ=255) aaGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCAt > 1:9833677/1‑68 (MQ=255) aaGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCAt > 1:14326065/1‑68 (MQ=255) aaGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCAt > 1:16249173/1‑68 (MQ=255) aaGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCAt > 1:17425677/1‑68 (MQ=255) aaGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCAt < 1:23325376/68‑1 (MQ=255) agagATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATg > 1:28380848/1‑68 (MQ=255) agagATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATg > 1:26892010/1‑68 (MQ=255) agagATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATg > 1:31512602/1‑68 (MQ=255) agagATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATg > 1:20119759/1‑68 (MQ=255) agaTACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGa > 1:7427585/1‑67 (MQ=255) gaTACGCCATCATTCGCGGCAACATCtgccgctaatcatggcgtatctcttgaaggacatgccgga > 1:13049589‑M2/1‑26 (MQ=255) tACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAac < 1:31371954/66‑1 (MQ=255) aCGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACAcc < 1:5418166/68‑1 (MQ=255) aCGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACAcc < 1:8546921/68‑1 (MQ=255) cGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCt < 1:10618964/68‑1 (MQ=255) gCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCt > 1:24142309/1‑67 (MQ=255) gCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCt > 1:1565980/1‑67 (MQ=255) gCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTg < 1:14568252/68‑1 (MQ=255) cATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGc < 1:24701543/67‑1 (MQ=255) aTTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGAtt > 1:5621868/1‑68 (MQ=255) aTTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGAtt > 1:28778772/1‑68 (MQ=255) gCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTg > 1:28146137/1‑66 (MQ=255) ggCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGACt < 1:10120852/67‑1 (MQ=255) ggCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCAAGAACACCTGCCGATTTGACt < 1:6595282/67‑1 (MQ=255) ggCAACATCTGCCGCTGTCGCATCTGCAGGGGGGTTTACCAGACCATGAACACCTGCCGATTTGAcg < 1:4442666/67‑2 (MQ=255) cAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGACttt < 1:28319181/67‑1 (MQ=255) | CATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGACTTTTACGCCC > CP009273/1039905‑1040037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |