| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1039965 | 240 (0.620) | 12 (0.040) | 6/98 | NT | 5.2% | coding (168/447 nt) | etp | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P |
| ? | CP009273 | = 1039970 | 225 (0.670) | coding (163/447 nt) | etp | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P | |||||
Only 100 of 341 total aligned reads displayed.
TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGACTTTT > CP009273/1039898‑1040031 | ttCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:21554636‑M1/1‑68 (MQ=255)ttCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:17381954‑M1/1‑68 (MQ=255)ttCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:282690‑M1/1‑68 (MQ=255)ttCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCA > 1:5849860‑M1/1‑68 (MQ=255) gTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACa < 1:31022391/68‑1 (MQ=255) gTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACa < 1:5099201/68‑1 (MQ=255) gTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACa < 1:9222992/68‑1 (MQ=255) tGCGATCTGAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGTTACGCCATGATTAGCGGGAACa < 1:13771337/67‑1 (MQ=255) gCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACAt < 1:24782599/67‑1 (MQ=255) ccATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACa > 1:25424117/1‑65 (MQ=255) cATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATca > 1:12613063/1‑66 (MQ=255) tctcAGCAGTGAGCTTACGTCCGGTATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc > 1:25863687‑M2/1‑64 (MQ=255) tcAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgccgc > 1:15632662‑M2/1‑62 (MQ=255) gcagTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc < 1:12053490‑M2/63‑5 (MQ=255) gcagTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc < 1:1712456‑M2/63‑5 (MQ=255) gcagTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc < 1:10488591‑M2/63‑5 (MQ=255) gcagTGAGCTTACGTCCGGCATATCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgcc < 1:30176200‑M2/63‑5 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:30634998/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:26440483/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:31416959/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:6120640/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:24167391/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:6570222/1‑67 (MQ=255) agTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTc > 1:10024840/1‑67 (MQ=255) gTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGc > 1:16663639/1‑68 (MQ=255) tGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa > 1:10313939/1‑68 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCg < 1:9009142/65‑1 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa < 1:9825348/67‑1 (MQ=255) gAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa < 1:10190209/67‑1 (MQ=255) gAGCTTACGTCCGGCATATCCTTCAAGAGATATGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa < 1:22038990/67‑1 (MQ=255) gCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgccgctaatcatgg > 1:26612528‑M2/1‑52 (MQ=255) gCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCa > 1:883076/1‑65 (MQ=255) gCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATc < 1:22923219/67‑1 (MQ=255) cTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGACGCTGTCGCATCt > 1:13218917/1‑67 (MQ=255) tACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCa > 1:20159790/1‑68 (MQ=255) cGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAgg > 1:14588978/1‑68 (MQ=255) cGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAgg > 1:15465759/1‑68 (MQ=255) gTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCagccgctaatcatggcgtatct > 1:27833337‑M2/1‑46 (MQ=255) tCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgt > 1:24691684/1‑68 (MQ=255) ccGTCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:20142810/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:18973213/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:32003433/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:12362612/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:6671425/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:16411335/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:23788744/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:18285257/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgtg < 1:23224775/68‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgt < 1:27096106/67‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgt < 1:25009619/67‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgt < 1:7680968/67‑1 (MQ=255) ccGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGgt < 1:19358093/67‑1 (MQ=255) cGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCtgccgctaatcatggcgtatctctt > 1:27910579‑M2/1‑43 (MQ=255) cATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGtttt > 1:5535137/1‑68 (MQ=255) aTGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGtttt > 1:22457642/1‑67 (MQ=255) aTGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGtttt < 1:11668949/67‑1 (MQ=255) aTGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGtttt < 1:29885625/67‑1 (MQ=255) ccTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAg > 1:9602673/1‑68 (MQ=255) cTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAg > 1:27462265/1‑67 (MQ=255) cTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAg > 1:15052445/1‑67 (MQ=255) cTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGa < 1:26903384/68‑1 (MQ=255) cTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGa < 1:28356654/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:73528/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:13127411/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:14025594/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:4283656/68‑1 (MQ=255) ttCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGAc < 1:16790123/68‑1 (MQ=255) cAAGAGATACGCCATTATTAGCGGCCACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGCCCa < 1:24001029/68‑1 (MQ=255) cAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCa < 1:15846841/68‑1 (MQ=255) cAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCa < 1:20345794/68‑1 (MQ=255) cAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCa < 1:4551777/68‑1 (MQ=255) cAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCa < 1:3345153/68‑1 (MQ=255) cAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCa < 1:20888801/68‑1 (MQ=255) aaGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCAt > 1:14326065/1‑68 (MQ=255) agagATACGCCATGATTAGCGGCAgatgttgccgctaatcatggcgtatctcttgaaggacatgccgg > 1:26137477‑M1/1‑24 (MQ=255) agagATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATg > 1:19615303/1‑68 (MQ=255) agagATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATg > 1:22785760/1‑68 (MQ=255) agaTACGCCATGATTAGCGGCAgatgttgcggctaatcatggcgtatctcttgaaggacatgccgggc > 1:25270953‑M1/1‑22 (MQ=255) agaTACGCCATGATTAGCGGCAgatgttgccgctaatcatggcgtttctcttgaaggacatgccgggc > 1:9409027‑M1/1‑22 (MQ=255) agaTACGCCATGATTAGCGGCAgatgttgccgctaatcatggcgtatctcttgaaggacatgccggac > 1:18070974‑M1/1‑22 (MQ=255) agaTACGCCATGATTAGCGGCAgatgttgccgctaatcatggcgtatctcttgaaggacatgccggac > 1:23447256‑M1/1‑22 (MQ=255) aTACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGagc > 1:23614836/1‑65 (MQ=255) tACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAac < 1:31371954/66‑1 (MQ=255) aCGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACAcc < 1:29407241/68‑1 (MQ=255) aCGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACAcc < 1:8546921/68‑1 (MQ=255) cGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCt < 1:10618964/68‑1 (MQ=255) ccATGATTAGCGGCAgatgttgccgctaatcttggcgtatctcttgaaggacatgccggacgtaa > 1:27346261‑M1/1‑15 (MQ=255) ccATGATTAGCGGCAgatgttgccgctaatcatggcgtatctcttgaaggacatgccggacgtaagc > 1:28937943‑M1/1‑15 (MQ=255) ttaTTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGa < 1:30334758/66‑1 (MQ=255) tGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGa < 1:11817155/68‑1 (MQ=255) aTTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGAtt > 1:28778772/1‑68 (MQ=255) aTTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGAtt > 1:5621868/1‑68 (MQ=255) ggCAgatgttgccgctaatcatggcgtatctcttgaaggacatgccggacgtaagctcactgctgag < 1:13555803‑M1/67‑64 (MQ=255) ggCAgatgttgccgctaatcatggcgtatctcttgaaggacatgccggacgtaagctcactgc < 1:21950369‑M1/63‑60 (MQ=255) ggCAgatgttgccgctaatcatggcgtatctcttgaaggacatgccggacgtaagctcactgc < 1:7634695‑M1/63‑60 (MQ=255) ggCAgatgttgccgctaatcatggcgtatctcttgaaggacatgccggacgtaagctcactgc < 1:7989216‑M1/63‑60 (MQ=255) ggCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGAc < 1:7447616/66‑1 (MQ=255) ggCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGACt < 1:19176669/67‑1 (MQ=255) ggCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGACt < 1:15333223/67‑1 (MQ=255) agatgttgccgctaatcatggcgtatctcttgaaggacatgccggacgtaagctcactgctgagatg > 1:7029420‑M1/1‑1 (MQ=255) | TTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCATGATTAGCGGCAACATCTGCCGCTGTCGCATCTGCAGGGTGTTTTACCAGACCATGAACACCTGCCGATTTGACTTTT > CP009273/1039898‑1040031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |