| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1070341 = | NA (NA) | 6 (0.020) | 5/94 | NT | NA | noncoding (1/28 nt) | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1070369 = | NA (NA) | intergenic (+33/+7) | rutR/putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||
TGCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1070415‑1070341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctccggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGA > CP009273/1070369‑1070435 TGCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCT < 1:4065641/67‑1TGCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCT < 1:19913932/67‑1TGCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCT < 1:31500192/67‑1TGCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCT < 1:26320721/67‑1TGCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCT < 1:1261528/67‑1TGCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCT < 1:6249362/67‑1TGCCGCTGGCGGTAACGCCAGCGTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCT < 1:18491816/67‑1 GCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCC < 1:8457752/68‑1 GCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCC < 1:31248709/68‑1 GCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCC < 1:16975378/68‑1 GCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCC < 1:3069850/68‑1 GCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCC < 1:28010732/68‑1 CGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTC < 1:16347595/68‑1 CTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCG > 1:6504274/1‑68 CTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCG > 1:19672104/1‑68 TGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACCGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGG < 1:17717423/68‑1 TGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGG < 1:20888197/68‑1 TGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGG < 1:18482463/68‑1 TGGCGGAAACGCCAGCTTAATGACTATAGGTTAAACACGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGG < 1:28052338/68‑1 TGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGGCTACCTGTTTAACCTATAGT < 1:25952436/68‑1 TGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGGCTACCTGTTTAACCTATAGT < 1:8553936/68‑1 TATAGGTTAAACAGGTAGCCGGAGGATGTTACGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCA < 1:4903464/68‑1 AGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGGCTACCTGTTTAACCTATAGTCATTAAG < 1:29843838/68‑1 cCAGGTCGCCGGAGGATGTTAC‑‑AACCTCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGT < 1:31091508/67‑1 GGTAGCCGGAGGATGTCAC‑‑AACCTCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTAC < 1:28495203/68‑1 TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACA < 1:6964798/68‑1 TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:31403729/1‑67 TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:17376891/1‑67 TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCG > 1:3880522/1‑59 CCTCGGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:23042829/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGTGGCAGCGGTATTAAC > 1:1097287/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCTGCGGTATTCAC > 1:30183356/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:24656279/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:3285036/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:451478/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:22174867/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:21349155/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:6544865/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:20520075/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:2851213/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:19069369/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:17879867/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:17654386/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:14915441/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCAC > 1:8025504/1‑66 CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGAATTCAC > 1:27994863/1‑66 CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACT < 1:9907395/68‑1 CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACT < 1:11886788/68‑1 CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACT < 1:13296074/68‑1 CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACT < 1:23538703/68‑1 CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACT < 1:1488314/68‑1 CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTGACCGCCAGCGGCAGCGGTATTCACACT < 1:18946785/68‑1 TCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTC > 1:21304260/1‑68 CCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCA > 1:31271268/1‑68 CCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCA < 1:9699004/68‑1 GGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGC < 1:22497743/68‑1 GCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCG > 1:30324293/1‑68 GCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCG > 1:8794063/1‑68 GCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCG > 1:8305416/1‑68 GCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCG > 1:4337508/1‑68 GCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCG > 1:24868549/1‑68 GCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCG > 1:2556046/1‑68 GCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCG > 1:3166637/1‑68 CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGc > 1:11903322/1‑67 CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGA > 1:22266507/1‑68 CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGA > 1:22600462/1‑68 CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGA > 1:2367907/1‑68 CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGA > 1:9450779/1‑68 TGCCGCTGGCGGTAACGCCAGCTTAATGACTATAGGTTAAACAGGTAGCCGGAGGATGTTAC‑‑AACCTCCTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1070415‑1070341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctccggcTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGA > CP009273/1070369‑1070435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |