| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1685627 = | 187 (0.490) | 11 (0.040) | 7/88 | NT | 7.0% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | CP009273 | 1685659 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
CCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1685705‑1685627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC > CP009273/1685659‑1685725 CCTGATAAGCGTAGCGCATCAGGAAATCTATGTTTTGTTTTCAGATGAAAAAGCCGGAGTGAAAATTC > 1:14123494/1‑68 TGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCT > 1:21203703/1‑67 tacGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:28430707/4‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:19106251/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:16021094/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:31705234/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:169266/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:29897111/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:18160848/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:19149278/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:27428602/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:26971576/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:1056/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:9158179/1‑67 TAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:9825101/1‑67 TAAGCGTAGCGCATCAGGCAATCTCAGATTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:21670354/1‑67 TAAGCGTAGCGCATCAGGCAATCTATGGTTTGTTTTAAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:12457344/1‑67 TAAGCCTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 1:15076070/1‑67 AAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGC > 1:11306141/1‑68 AAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGC < 1:31853978/68‑1 AAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGC > 1:11232163/1‑68 AAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGC > 1:660083/1‑68 acCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG < 1:3622912/66‑1 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG < 1:14577153/68‑1 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG < 1:22219458/68‑1 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG > 1:16267961/1‑68 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG < 1:13302069/68‑1 AGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG < 1:1314340/68‑1 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGGGTTT > 1:22029953/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:8462254/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:745978/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:839670/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:29892254/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:25731391/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:23428496/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:7394166/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:6754423/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:29463556/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:31167453/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:6396905/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:3664657/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:23630817/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:32014093/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:3271024/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:23292654/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:13251047/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:1444694/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:20966137/1‑68 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTT < 1:10401795/67‑1 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTT < 1:3986677/67‑1 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTT < 1:30752318/67‑1 GTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGT < 1:30396173/66‑1 GTAGCGCATCAGGCAATCTCTGGCTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 1:25382795/1‑68 AATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAA < 1:864108/68‑1 AATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACA < 1:10273056/67‑1 AATCTCTGCTTTGTTTGCAGATGAACACGCCGGAGGGCAAATACTCCGGCGTTTTCATCTGAAAACA < 1:14833780/67‑1 ATCTCTGGTTTGTATTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAA < 1:29324452/68‑1 ATCTCTGGTGTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAA < 1:2350849/68‑1 TGGTTTGTTTCCAGATGAAAACGCCGGAGTGAAAAATCTCCGGCGTTTTCATCTGAAAACAAACCAGA < 1:2935913/68‑1 GGTTTGTTTTCAGATGAAAACGCCGGAGGGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAG < 1:27681066/68‑1 TGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTG < 1:27048556/68‑1 TGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTG < 1:11291145/68‑1 TGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTG < 1:16628627/68‑1 GTTTACAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGC < 1:10431230/68‑1 CTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT < 1:10530356/68‑1 CTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT > 1:14293476/1‑68 TCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT > 1:23840836/1‑67 TCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT > 1:18170494/1‑67 TCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT > 1:25997682/1‑67 TCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT > 1:26575116/1‑67 TCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTT > 1:17056966/1‑67 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:15445213/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:26476051/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:17251465/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC < 1:28369446/68‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTT > 1:24137849/1‑67 tGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:30674861/67‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:31690502/68‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:20677649/68‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:25954153/68‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:13438927/68‑1 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCT < 1:18449174/68‑1 GTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCA > 1:14212085/1‑68 GTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCA > 1:13071202/1‑68 TTTCATCTGAAAACAAACCAGAGATTGCCTGATGGGCTACGCTTATCAGGCCTACCTTTTCCTGGAAC > 1:22022514/1‑68 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:31766746/68‑1 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:8099386/68‑1 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:18202691/68‑1 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:6721897/68‑1 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA < 1:26842030/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:11073895/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:27765662/68‑1 TCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC < 1:10296216/68‑1 CCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1685705‑1685627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACAC > CP009273/1685659‑1685725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |