New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =187 (0.490)11 (0.040) 7/88 NT 7.0% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 248 total aligned reads displayed.

CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGC  >  CP009273/1685560‑1685690
                                                                   |                                                               
gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                 <  1:27765662‑M1/1‑1 (MQ=255)
 tgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgaa                                                                <  1:6721897‑M1/2‑1 (MQ=255)
  tGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCaaa                                                               >  1:2864487/1‑68 (MQ=255)
  tGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCaaa                                                               >  1:3262449/1‑68 (MQ=255)
       gCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGcc                                                          <  1:2518004/68‑1 (MQ=255)
       gCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGcc                                                          <  1:20128051/68‑1 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                          <  1:25954153‑M1/8‑1 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                          <  1:18449174‑M1/8‑1 (MQ=255)
        cGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCg                                                         >  1:7116950/1‑68 (MQ=255)
         gATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCgg                                                        >  1:10439263/1‑68 (MQ=255)
         gATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCgg                                                        >  1:22273274/1‑68 (MQ=255)
          aaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCgg                                                        >  1:24137849‑M1/58‑67 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGga                                                       >  1:11034260/1‑68 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGga                                                       >  1:19038578/1‑68 (MQ=255)
           aaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGga                                                       >  1:17056966‑M1/57‑67 (MQ=255)
           aaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGga                                                       >  1:26575116‑M1/57‑67 (MQ=255)
              cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa                                                    <  1:23330855/67‑1 (MQ=255)
              cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa                                                    <  1:13287547/67‑1 (MQ=255)
                  tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTc                                               >  1:30766248/1‑68 (MQ=255)
                       aCGTTCCGGCTGTCCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc                                          >  1:10144739/1‑68 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc                                          >  1:31579150/1‑68 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc                                          >  1:7508864/1‑68 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc                                          >  1:4812888/1‑68 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc                                          >  1:7374058/1‑68 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc                                          >  1:24442962/1‑68 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcc                                          >  1:16565322/1‑68 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTcag                                         >  1:17967125/1‑66 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCg                                         >  1:10023378/1‑68 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCg                                         >  1:5227907/1‑68 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCg                                         >  1:15565477/1‑68 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCg                                         >  1:23642014/1‑68 (MQ=255)
                          ttCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGc                                       >  1:8049905/1‑68 (MQ=255)
                            ccGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGt                                     <  1:17647987/68‑1 (MQ=255)
                            ccGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGt                                     <  1:26022096/68‑1 (MQ=255)
                            ccGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGt                                     <  1:272732/68‑1 (MQ=255)
                            ccGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGt                                     <  1:30374173/68‑1 (MQ=255)
                              ggCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGttt                                   >  1:28089689/1‑68 (MQ=255)
                               gCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGttt                                   >  1:27604812/1‑67 (MQ=255)
                               gCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGttt                                   >  1:21153168/1‑67 (MQ=255)
                                cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                 >  1:12179955/1‑68 (MQ=255)
                                cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                 >  1:21766416/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                <  1:29943987/68‑1 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                >  1:6499885/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                >  1:9129188/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                >  1:31123887/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                >  1:26928912/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                >  1:8746908/1‑68 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                >  1:3477657/1‑65 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                              <  1:25538962/67‑1 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                              <  1:29526559/67‑1 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                              <  1:8384671/67‑1 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                              <  1:16260161/67‑1 (MQ=255)
                                        gCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:15839202/1‑68 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCCCGGCCAAAACGCCGGAGAATTTTCACTGCGGCGTTTTCATCTGaaa                         >  1:16014911/1‑67 (MQ=39)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGTCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:21897579/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:5428494/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:9568812/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         <  1:5134555/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:9760123/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:12309090/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:13584533/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:19774976/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:12835321/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                         >  1:13052183/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACGCCGGCGTTTTCATCTGaaa                         >  1:20025224/1‑67 (MQ=255)
                                           caatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                      <  1:27048556‑M1/44‑1 (MQ=255)
                                           caatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                      <  1:11291145‑M1/44‑1 (MQ=255)
                                           caatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                      <  1:16628627‑M1/44‑1 (MQ=255)
                                           aTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                      <  1:377792/68‑1 (MQ=255)
                                            ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                     >  1:6346517/1‑68 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                    <  1:10645222/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                     >  1:8198932/1‑67 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                   <  1:15175154/68‑1 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                   <  1:3717087/68‑1 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                    >  1:20648351/1‑67 (MQ=255)
                                                  aggagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga               >  1:23210215/4‑68 (MQ=255)
                                                  agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGTAAACAAACCaga               >  1:19275069/1‑68 (MQ=255)
                                                  agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga               >  1:31839802/1‑68 (MQ=255)
                                                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAATACAAACCAGAGAt            <  1:29324452‑M1/54‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGACAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAgaga             <  1:15247995/67‑1 (MQ=255)
                                                       tgttttcagatgAAAACGCCGGAGTATTTGCCCTCCGGCGTGTTCATCTGCAAACAAAGCAGAGAtt           <  1:14833780‑M1/55‑1 (MQ=255)
                                                       tgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAtt           <  1:10273056‑M1/55‑1 (MQ=255)
                                                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg          >  1:17384651/1‑67 (MQ=255)
                                                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg          <  1:6276818/67‑1 (MQ=255)
                                                         aTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGcc        <  1:1406436/68‑1 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg          >  1:26277040/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg          >  1:4332677/1‑65 (MQ=255)
                                                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg      >  1:18297419/1‑68 (MQ=255)
                                                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg      >  1:23747584/1‑68 (MQ=255)
                                                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg      >  1:14358188/1‑68 (MQ=255)
                                                            cACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa     <  1:23982360/68‑1 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt    >  1:11930313/1‑68 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc  <  1:4103767/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc  <  1:560968/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc  <  1:4719027/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc  <  1:20771185/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc  <  1:22746965/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc  <  1:11795254/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc  <  1:1423373/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc  <  1:10911936/68‑1 (MQ=255)
                                                                   |                                                               
CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGC  >  CP009273/1685560‑1685690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.