New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =187 (0.490)11 (0.040) 7/88 NT 7.0% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 255 total aligned reads displayed.

CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726
                                                                   |                                                                   
cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                                                     >  1:21766416/1‑68 (MQ=255)
cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                                                     >  1:12179955/1‑68 (MQ=255)
 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:8746908/1‑68 (MQ=255)
 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:6499885/1‑68 (MQ=255)
 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:3915862/1‑68 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:29526559/67‑1 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGTCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:21897579/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:9760123/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:19774976/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:12835321/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:12309090/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:10679308/1‑67 (MQ=255)
          gcaatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGTaaac                                                           <  1:10431230‑M1/43‑1 (MQ=255)
           caatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                                                          <  1:11291145‑M1/44‑1 (MQ=255)
           caatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                                                          <  1:27048556‑M1/44‑1 (MQ=255)
            ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                                                         >  1:3433975/1‑68 (MQ=255)
            aatctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAaaaca                                                          <  1:10273056‑M2/12‑1 (MQ=255)
            aatctctgctttgtttgcagatgaacacgccggagggcaaatactccggcgttttCATCTGAaaaca                                                          <  1:14833780‑M2/12‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:23706278/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:15804356/68‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                                                       <  1:5423871/68‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                                                       <  1:5151774/68‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                                                       <  1:16140487/68‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                                                       <  1:3717087/68‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        >  1:20648351/1‑67 (MQ=255)
               ctctggtttgttttcagatgAAAACGCCGGAGAATTTTCCCTCCGGCGTTTTCATCTGAAAACAAAcc                                                      <  1:27681066‑M1/48‑1 (MQ=255)
                tctggtttgttttcagatgAAAACGCCGGAGATTTTTCACTCCGGCGTTTTCATCTGGAAACAAACCa                                                     <  1:2935913‑M1/49‑1 (MQ=255)
                gcagcaGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCa                                                     >  1:31483474/1‑68 (MQ=255)
                  aggagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   >  1:23210215/4‑68 (MQ=255)
                  agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   >  1:31839802/1‑68 (MQ=255)
                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                                                  >  1:29992357/1‑68 (MQ=255)
                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                                                  >  1:25752827/1‑68 (MQ=255)
                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAATACAAACCAGAGAt                                                <  1:29324452‑M1/54‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGACAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAgaga                                                 <  1:15247995/67‑1 (MQ=255)
                       tgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAAAACAAACCAGAGATTg                                              <  1:16628627‑M2/24‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:6276818/67‑1 (MQ=255)
                         aTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGcc                                            <  1:1406436/68‑1 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:19048721/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:26277040/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:17521285/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:15208482/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt                                           <  1:10045657/68‑1 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:18297419/1‑68 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:25699907/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:11930313/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        <  1:24697230/68‑1 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:12715682/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:4279448/1‑68 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:10911936/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:560968/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:26073912/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:4719027/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:4103767/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:20771185/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:3590620/68‑1 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:29892254‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:1444694‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:32014093‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:3271024‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:6396905‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:745978‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:839670‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:8462254‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:13251047‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:23428496‑M1/1‑68 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt                              <  1:22219458‑M1/68‑1 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt                              >  1:16267961‑M1/1‑68 (MQ=255)
                                        GCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCtt                             >  1:11306141‑M1/1‑68 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:19149278‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:9158179‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:16021094‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:31705234‑M1/1‑67 (MQ=255)
                                             AGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCa                         >  1:21203703‑M1/1‑67 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:20317723/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:2352088/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:20075318/66‑1 (MQ=255)
                                                  tttGACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTa                   <  1:22423138/68‑1 (MQ=255)
                                                   ttCAGTCCGGGGTTTTCATCTGAAATCAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:15479008/68‑1 (MQ=25)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:31334682/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:17928322/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:3083491/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:24290633/68‑1 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:14723141/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:6945799/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:7389963/1‑68 (MQ=255)
                                                       ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:14293476‑M2/13‑68 (MQ=255)
                                                       ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              <  1:10530356‑M2/56‑1 (MQ=255)
                                                        tccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:17056966‑M2/12‑67 (MQ=255)
                                                        tccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:18170494‑M2/12‑67 (MQ=255)
                                                        tccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:23840836‑M2/12‑67 (MQ=255)
                                                           tgcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:30674861‑M2/60‑1 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:13438927‑M2/60‑1 (MQ=255)
                                                              gttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCa       >  1:14212085‑M2/6‑68 (MQ=255)
                                                              gttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCa       >  1:13071202‑M2/6‑68 (MQ=255)
                                                                 ttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAaca    <  1:8099386‑M2/66‑1 (MQ=255)
                                                                 ttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAaca    <  1:6721897‑M2/66‑1 (MQ=255)
                                                                 ttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAaca    <  1:26842030‑M2/66‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:27765662‑M2/67‑1 (MQ=255)
                                                                   cATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACt  <  1:19952696/68‑1 (MQ=255)
                                                                   cATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACt  <  1:27250967/68‑1 (MQ=255)
                                                                   |                                                                   
CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.