| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2394156 = | 277 (0.720) | 14 (0.040) | 6/98 | NT | 5.4% | coding (879/1338 nt) | nuoF | NADH:ubiquinone oxidoreductase, chain F |
| ? | CP009273 | 2394171 = | 250 (0.740) | coding (864/1338 nt) | nuoF | NADH:ubiquinone oxidoreductase, chain F | |||||
CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2394228‑2394156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggcTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGTGCC > CP009273/2394171‑2394236 CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGC < 1:7111728/68‑1CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGC < 1:27408190/68‑1CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAG > 1:8586196/1‑67CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAG > 1:6473761/1‑67CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAG > 1:6439893/1‑67CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAG > 1:27974656/1‑67CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAG > 1:26782501/1‑67 ACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAG < 1:24514095/68‑1 ACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAG > 1:20244107/1‑68 ACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAG > 1:18046933/1‑68 ACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAG < 1:16870929/68‑1 CGCGCGCTCCTCGAACATTACGCCGGTCGTATGCGTGATGGTCTGTTATTTAAAGCCTGGCAGCCAGG < 1:24361368/68‑1 CGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGG < 1:31770701/68‑1 CGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGG < 1:24361398/68‑1 CGCGAGATCCTCCCAGATTACGCCGGTGGTATGCGTGATGGTCAGAAATTTAAAGCCTGGCAGCCAcg < 1:10884007/68‑3 GCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGC < 1:19036441/68‑1 GCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGC < 1:19561731/68‑1 GCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGC < 1:11695409/68‑1 CCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAAT < 1:25685634/68‑1 CCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAAT < 1:930874/68‑1 AGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAATTTCAGA < 1:14095235/68‑1 TACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAATTTCAGACCAT < 1:15312736/68‑1 TACGCCGGTGGTATGCGTGATGGTCTCAAATTTAAAGCCTGCCAGCCAGGCTTTAAATTTCAGACCAT < 1:9182744/68‑1 TACGCCGGTGGTATGCGTGATGGGCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAATTTCAGACCAT < 1:4729272/68‑1 TACGCCGGTGGTATGCGTGATGGGCTGAAATTTAAAGCCTGCCAGCCAGGCTTTAAATTTCAGACCAT < 1:25128465/68‑1 TACGCCGGTGGTATGCGTGATGGCCTGAACTTTAAAGCCTGGCAGCCCGGCTTTAAATTTCAGACCAT < 1:6024209/68‑1 TACGCCGGGGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAATTTCAGACCAT < 1:2502207/68‑1 TACGCCGGGGGTATGCGTGATGGTCTGAAATTTAAACCCTGGCAGCCAGGCTTTAAATTTCAGACCAT < 1:29133913/68‑1 TACGCCGGGGGTATGCGTGATGGGCTCAAATTAAAAGCCGGGCCGCCAGGCTTTAAATTTCAGACCAT < 1:2399758/68‑1 TACCCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAATTTCAGACCAT < 1:6257386/68‑1 CGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAATTTCAGACCATCA < 1:15800191/68‑1 CGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGCTTTAAATTTCAGACCATCACG < 1:7750264/67‑1 ccCCAGGCTTAAAATTCCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGT < 1:6769292/66‑1 GCCAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTG > 1:5623938/1‑68 GCCAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTG > 1:24158662/1‑68 CAGGCTTTAAATTTCAGCCCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGGGGT < 1:14847012/68‑1 CAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT < 1:19658508/68‑1 CAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT > 1:18022226/1‑68 CAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT < 1:17099477/68‑1 CAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT < 1:27546864/68‑1 CAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT < 1:16747294/68‑1 CAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT < 1:24543917/68‑1 CAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT < 1:20436069/68‑1 CAGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT < 1:7572112/68‑1 CAGGCTTTAAATCTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT < 1:16637143/68‑1 AGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT > 1:28427934/1‑67 AGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT > 1:28630876/1‑67 AGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT > 1:24355034/1‑67 AGGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGT > 1:2245373/1‑67 GGCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGTG > 1:20392484/1‑67 GCTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGTGCC > 1:21998477/1‑68 CTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGTGCC < 1:11018623/67‑1 CTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGTGCC < 1:31450950/67‑1 CTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGTGC < 1:22644898/66‑1 CGCACGCGAGATCCTCGAAGATTACGCCGGTGGTATGCGTGATGGTCTGAAATTTAAAGCCTGGCAGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2394228‑2394156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggcTTTAAATTTCAGACCATCACGCATACCACCGGCGTAATCTTCGAGGATCTCGCGTGCGGTGGTGCC > CP009273/2394171‑2394236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |