| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2640634 = | 318 (0.830) | 12 (0.040) | 9/94 | NT | 5.0% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 185 (0.570) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
GATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2640708‑2640634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG > CP009273/2640664‑2640729 GATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGC > 1:20233960/1‑68GATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGC > 1:2265603/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAACCGCGGCTGCTGGATAACGTTGGCA > 1:19782325/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGGTAACGTTGGCA > 1:23205932/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCc > 1:31802479/1‑67 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:28513085/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:18792609/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:16992203/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:16007811/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:25183512/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:2540109/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:15680501/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:29823125/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:10353315/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:13988713/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:7995366/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:778431/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:31840369/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:651286/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACAAAACGCGGCTGCTGGATAACGTTGGCA > 1:15514797/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCCCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:30418838/1‑68 TCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAG < 1:25693716/68‑1 TCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA < 1:26195183/67‑1 TCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:31732263/1‑67 TCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:13040596/1‑67 CTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGC < 1:29784023/68‑1 CTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGC < 1:6702465/68‑1 CTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGC < 1:2516971/68‑1 TGCTGATTGTCGGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:13631645/1‑68 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGac > 1:24902462/1‑66 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:3532405/1‑68 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:14069504/1‑68 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:10017867/1‑68 GCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:20715196/1‑67 GCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:20948085/1‑67 GCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:11165984/1‑67 TGATTGTCAGCCCGTAAATGCCTCGCTTGTTAACCACACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:25333209/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:7088924/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:1597338/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:28077007/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:28520211/1‑67 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:15448673/1‑67 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:15456518/1‑67 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:15942112/1‑67 GATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG > 1:21196483/1‑67 GATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG > 1:12865260/1‑67 TGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTG < 1:30872278/68‑1 TGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTG < 1:1571869/68‑1 CAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGT < 1:6695905/67‑1 CAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGT < 1:2370358/67‑1 CAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGT < 1:17956991/67‑1 AAATGCCTCGCTTGTTAACCAAACCCGGCTCCTGGATAACTTTGGCAGCCGCGTTTGGTTAACAAGC < 1:1451583/67‑1 ATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAG < 1:806240/68‑1 TGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGG < 1:25491673/68‑1 TGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGG < 1:21344972/68‑1 CTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCA < 1:9556809/67‑1 CCAACCGCGGCCGCTGGACACCGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAC < 1:11565030/68‑1 AAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAA < 1:13989047/68‑1 CGCGGCGGCTGGATACCGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCA < 1:28963931/68‑1 TGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAT < 1:5822462/68‑1 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:24607564/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:19649046/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:14437714/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:29547466/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:16365878/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCc < 1:26999631/65‑2 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCc < 1:26091659/65‑2 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCc < 1:3566754/65‑2 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCc < 1:12834320/65‑2 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:12538610/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:8777236/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:31076520/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:12865541/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:18106310/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:5748503/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGT < 1:26534942/67‑1 AGCCGCGTTTGGTTAACAAGCGAGACATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:5887690/1‑68 AGCCGCGGTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCc < 1:26091643/65‑2 GCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:14518416/1‑67 GCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:18028108/1‑67 CGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCC < 1:18303341/68‑1 CGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGC > 1:28744829/1‑67 CGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGC > 1:7562917/1‑67 CGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGC > 1:27023741/1‑67 CGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGC < 1:26401535/67‑1 CGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC < 1:904590/65‑1 GTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG < 1:21923653/67‑1 GTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG < 1:20774905/67‑1 GTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG < 1:9980606/67‑1 GATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2640708‑2640634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG > CP009273/2640664‑2640729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |