New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2640634 =318 (0.830)12 (0.040) 9/94 NT 5.0% coding (51/2313 nt) pbpC penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain
?CP009273 2640664 = 185 (0.570)coding (21/2313 nt) pbpC penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain

Only 100 of 401 total aligned reads displayed.

GACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCA  >  CP009273/2640568‑2640701
                                                                  |                                                                   
cgggcgaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaac                                                                     <  1:20774905‑M1/1‑1 (MQ=255)
  cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg                                                                  >  1:1626961/1‑68 (MQ=255)
  cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg                                                                  >  1:14478927/1‑68 (MQ=255)
   ttCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg                                                                  >  1:18230204/1‑67 (MQ=255)
   gcgaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcg                                                                  >  1:28744829‑M1/64‑67 (MQ=255)
   gcgaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcg                                                                  >  1:7562917‑M1/64‑67 (MQ=255)
    tCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGc                                                                <  1:20097852/68‑1 (MQ=255)
    tCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGc                                                                <  1:14061832/68‑1 (MQ=255)
     gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgtctcgcttgttaaccaaaCGCGGCt                                                               >  1:5887690‑M1/62‑68 (MQ=255)
     gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcg                                                                  <  1:904590‑M1/4‑1 (MQ=255)
     gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGc                                                                >  1:18028108‑M1/62‑67 (MQ=255)
     gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCt                                                               >  1:8777236‑M1/62‑68 (MQ=255)
      aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg                                                              <  1:6583021/68‑1 (MQ=255)
      aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg                                                              <  1:26211454/68‑1 (MQ=255)
      aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg                                                              <  1:22262125/68‑1 (MQ=255)
      aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg                                                              <  1:23758718/68‑1 (MQ=255)
       tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg                                                              >  1:18396323/1‑67 (MQ=255)
       tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGc                                                             <  1:23427467/68‑1 (MQ=255)
       tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGc                                                             <  1:12971438/68‑1 (MQ=255)
       ccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCTGc                                                             >  1:29547466‑M1/60‑68 (MQ=255)
        gggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCt                                                               <  1:12834320‑M1/7‑1 (MQ=255)
        gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc                                                            <  1:20257073/68‑1 (MQ=255)
          aGCGGTAGAGGCAAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCGGCCa                                                           >  1:11628726/1‑67 (MQ=255)
           gCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc                                                         >  1:13234136/1‑68 (MQ=255)
           gCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc                                                         >  1:9600026/1‑68 (MQ=255)
             ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAATAAGGAGAAAGGGCGCGGCTGCCAAc                                                         <  1:21670219/66‑1 (MQ=255)
             ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc                                                         <  1:11521606/66‑1 (MQ=255)
             ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc                                                         <  1:9230697/66‑1 (MQ=255)
             ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc                                                         <  1:19182143/66‑1 (MQ=255)
                agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa                                                     >  1:27922839/1‑67 (MQ=255)
                  agGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATcc                                                  >  1:31839818/1‑68 (MQ=255)
                     ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc                                               >  1:27190963/1‑68 (MQ=255)
                     ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc                                               >  1:31028697/1‑68 (MQ=255)
                     ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc                                               >  1:6093466/1‑68 (MQ=255)
                     ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc                                               >  1:14358716/1‑68 (MQ=255)
                     ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc                                               >  1:7304339/1‑68 (MQ=255)
                     ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCca                                                 <  1:23516994/66‑1 (MQ=255)
                     ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGCCTGCATACGTTTTCaagc                                               >  1:2595637/1‑68 (MQ=255)
                         agTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc                                           >  1:30102859/1‑68 (MQ=255)
                         agTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc                                           >  1:16736275/1‑68 (MQ=255)
                          gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCagcagc                                            <  1:6167440/66‑1 (MQ=255)
                          gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc                                           >  1:24728795/1‑67 (MQ=255)
                            ttATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCcgc                                         <  1:18564640/67‑1 (MQ=255)
                            ttATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCcgc                                         <  1:8918053/67‑1 (MQ=255)
                            ttATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCcgc                                         <  1:24363895/67‑1 (MQ=255)
                               tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt                                     >  1:2970991/1‑68 (MQ=255)
                               tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt                                     >  1:16932404/1‑68 (MQ=255)
                               tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt                                     >  1:5471791/1‑68 (MQ=255)
                                 tGCTCCCCACGCTGCAAGAATAAGGAGAAACCGCCCGGCTCCCAACGATATCCAGCAGCCGCGTTAgg                                   >  1:30323442/1‑68 (MQ=255)
                                 tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg                                   <  1:435045/68‑1 (MQ=255)
                                  gCTCCCCACGCTGCAAGAAAAAGTAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt                                  <  1:3232980/68‑1 (MQ=255)
                                  gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt                                  <  1:686450/68‑1 (MQ=255)
                                  gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt                                  <  1:21967871/68‑1 (MQ=255)
                                  gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt                                  <  1:28183742/68‑1 (MQ=255)
                                  gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt                                  <  1:26764414/68‑1 (MQ=255)
                                    tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa                                >  1:22970217/1‑68 (MQ=255)
                                    tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa                                >  1:8478118/1‑68 (MQ=255)
                                    tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa                                >  1:264508/1‑68 (MQ=255)
                                    tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa                                >  1:12351381/1‑68 (MQ=255)
                                        cACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa                            <  1:11102956/68‑1 (MQ=255)
                                         aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa                            >  1:6000509/1‑67 (MQ=255)
                                         aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa                            >  1:10092385/1‑67 (MQ=255)
                                         aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa                            >  1:14738777/1‑67 (MQ=255)
                                         aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa                            >  1:3950672/1‑67 (MQ=255)
                                         aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa                            >  1:6452738/1‑67 (MQ=255)
                                          cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGc                          >  1:24590944/1‑68 (MQ=255)
                                          cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGc                          >  1:18926286/1‑68 (MQ=255)
                                          cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGATATCCAGCAGCCGCGTTTGGTTAACAAGc                          >  1:2902529/1‑68 (MQ=255)
                                           gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCg                         >  1:10036016/1‑68 (MQ=255)
                                            cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa                        >  1:15773928/1‑68 (MQ=255)
                                              gCAAGAAAAAGGTGAAAGGGCGCGTCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg                      <  1:14978314/68‑1 (MQ=255)
                                              gCAAGAAAAAGGAGATAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg                      <  1:6978529/68‑1 (MQ=255)
                                              gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg                      <  1:15493210/68‑1 (MQ=255)
                                              gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg                      <  1:1810243/68‑1 (MQ=255)
                                              gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg                      <  1:20143166/68‑1 (MQ=255)
                                              gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg                      <  1:12691061/68‑1 (MQ=255)
                                                cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa                    <  1:21344972‑M1/50‑1 (MQ=255)
                                                cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa                    <  1:25491673‑M1/50‑1 (MQ=255)
                                                aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGc                     <  1:5072281/67‑1 (MQ=255)
                                                aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGc                     <  1:25621452/67‑1 (MQ=255)
                                                aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGc                     <  1:10388212/67‑1 (MQ=255)
                                                 ctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAt                   <  1:806240‑M1/51‑1 (MQ=255)
                                                 aGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAt                   >  1:4908517/1‑68 (MQ=255)
                                                   aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt                 >  1:13598605/1‑68 (MQ=255)
                                                    aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt                  <  1:1760617/66‑1 (MQ=255)
                                                    aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt                  <  1:12204434/66‑1 (MQ=255)
                                                     aaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTAc               >  1:19827143/1‑68 (MQ=255)
                                                        ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg             >  1:27377349/1‑67 (MQ=255)
                                                         gagaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg             >  1:30748356/1‑66 (MQ=255)
                                                          agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg             >  1:31122583/1‑65 (MQ=255)
                                                          agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt            <  1:19411363/66‑1 (MQ=255)
                                                          agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt            <  1:21105154/66‑1 (MQ=255)
                                                          agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt            <  1:25329629/66‑1 (MQ=255)
                                                          agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt            <  1:26943076/66‑1 (MQ=255)
                                                          agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt            <  1:11238858/66‑1 (MQ=255)
                                                          agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTc           <  1:3541731/67‑1 (MQ=255)
                                                             aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc       <  1:31420509/68‑1 (MQ=255)
                                                               gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa     >  1:10809719/1‑68 (MQ=255)
                                                                ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa     >  1:19644873/1‑67 (MQ=255)
                                                                 gcgcGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa     <  1:9728872/66‑1 (MQ=255)
                                                                  |                                                                   
GACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCA  >  CP009273/2640568‑2640701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.