| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2640634 = | 318 (0.830) | 12 (0.040) | 9/94 | NT | 5.0% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 185 (0.570) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 336 total aligned reads displayed.
ATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG > CP009273/2640598‑2640729 | ttgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt < 1:13989047‑M1/33‑1 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt < 1:6128023/68‑1 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:2970991/1‑68 (MQ=255) tgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTg < 1:30872278‑M2/4‑1 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:28042589/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg < 1:435045/68‑1 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:10284149/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:10986680/1‑68 (MQ=255) gtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCTGCCAACGGTGTCCAGCGGCCGCGGTTgg < 1:11565030‑M1/35‑1 (MQ=255) gCTGCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:11691251/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:26764414/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:8708140/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:28183742/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:25611844/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:21967871/68‑1 (MQ=255) cagaccgtaaatgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGt < 1:6695905‑M2/6‑1 (MQ=255) cagaccgtaaatgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGt < 1:2370358‑M2/6‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:8478118/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:20120671/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa < 1:23449104/68‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:7909845/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:12351381/1‑68 (MQ=255) ccccACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:12780797/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:14738777/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:18107391/1‑67 (MQ=255) cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGc > 1:6355906/1‑68 (MQ=255) gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCg > 1:14075589/1‑68 (MQ=255) aaatgcctcgcttgttaaccaaacccggctcctggataactttggcagccgcgTTTGGTTAACAAGc < 1:1451583‑M2/14‑1 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:10508539/1‑68 (MQ=255) atgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGTTAACAAGCGAg < 1:806240‑M2/17‑1 (MQ=255) tgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGTTAACAAGCGAgg < 1:25491673‑M2/18‑1 (MQ=255) tgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGTTAACAAGCGAgg < 1:21344972‑M2/18‑1 (MQ=255) gCAAGAAAAAGGTGAAAGGGCGCGTCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:14978314/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:10060430/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:18406321/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:1928830/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:17423009/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGc < 1:5072281/67‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGc < 1:3689582/67‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:5892230/68‑1 (MQ=255) ctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGTTAACAAGCGAGGCa < 1:9556809‑M2/20‑1 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:13598605/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:14395227/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:30279362/1‑68 (MQ=255) aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt < 1:12204434/66‑1 (MQ=255) aaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTAc > 1:19827143/1‑68 (MQ=255) aaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTAc > 1:239475/1‑68 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:27377349/1‑67 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:31122583/1‑65 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:29504318/1‑65 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:6888526/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTc < 1:3541731/67‑1 (MQ=255) gaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCt < 1:31962161/67‑1 (MQ=255) accaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTg < 1:17956991‑M1/61‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:31420509/68‑1 (MQ=255) caaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACa < 1:1571869‑M1/64‑1 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:1810180/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCACCAGCCGCGTTTGGTTAACAAGCGAGGCATTTAAGGTCTGACaa > 1:25984723/1‑68 (MQ=255) ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:7016876/1‑67 (MQ=255) ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:21682349/1‑67 (MQ=255) ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:13187254/1‑67 (MQ=255) gcgcGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa < 1:9728872/66‑1 (MQ=255) cgcggcggctggataccgttggcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca < 1:28963931‑M2/38‑1 (MQ=255) CGCGGCTGCCAACGTTATCCAGCAGCCGCGTGTGGTTAACAAGCGAGGCATTTACGGGCTGACAATca < 1:25333209‑M1/68‑1 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:28520211‑M1/1‑67 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:15448673‑M1/1‑67 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:15942112‑M1/1‑67 (MQ=255) GGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATcagca > 1:10017867‑M1/1‑68 (MQ=255) GGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATcagc > 1:11165984‑M1/1‑67 (MQ=255) GGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATcagc > 1:20948085‑M1/1‑67 (MQ=255) GCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATcagcag < 1:2516971‑M1/68‑1 (MQ=255) gGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:31802479‑M1/2‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTTGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:15514797‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGGGGCATTTACGGTCTGACAATCAGCAGAt > 1:30418838‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:16007811‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:16992203‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:18792609‑M1/1‑68 (MQ=255) GCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATc > 1:2265603‑M1/1‑68 (MQ=255) aCGTTATCCAGCAGCCGCGTTGGGTTAACAAGCGAGGCATTTACGGGCTGACAATCAGCAGATCTTCa < 1:7480313/68‑1 (MQ=255) cGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCa > 1:29800810/1‑67 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAg > 1:22872352/1‑67 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAg > 1:3056061/1‑67 (MQ=255) ttATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGcc > 1:19425688/1‑68 (MQ=255) ttATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGcc > 1:18962014/1‑68 (MQ=255) ttATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGcc > 1:16801852/1‑68 (MQ=255) aTCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCcgc < 1:6614774/68‑1 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCcgcg > 1:3459322/1‑67 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCcgcg > 1:7588207/1‑67 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCcgcg > 1:2721667/1‑67 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCcgcg > 1:1952200/1‑67 (MQ=255) cagcagCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGcc > 1:20406866/1‑68 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCgg > 1:24607564‑M2/10‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCgccc < 1:26999631‑M2/58‑2 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGt < 1:26534942‑M2/60‑1 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:5748503‑M2/8‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:12865541‑M2/8‑68 (MQ=255) cgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTcgc < 1:26401535‑M2/63‑1 (MQ=255) cgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTcgc > 1:28744829‑M2/5‑67 (MQ=255) cgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc < 1:904590‑M2/61‑1 (MQ=255) gTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTcgcccg < 1:20774905‑M2/66‑1 (MQ=255) | ATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG > CP009273/2640598‑2640729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |