New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3076151NA (NA)11 (0.040)
+ATTTCGCAGCAATCT		 3/82 NT 5.5% noncoding (103/147 nt) REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences
?CP009273 3667798 = 259 (0.670)noncoding (58/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences

CATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3076111‑3076151
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCGGATAAGATGCGCCAGCATCGCATCC  >  CP009273/3667798‑3667830
                                         |||||||||||||||                                 
cccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACGATTTCGGAGGATTGTGTAGGCCGGATA                       >  1:13419403/4‑68
               TGCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATC        >  1:8512585/1‑68
               TGCTGACGCATCTTATACGGCCTACGATTTCGGAGCAAACTGTAGGCCGGATAAGATGCGTCAGGATC        >  1:28100259/1‑68
                GCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATC        >  1:29861241/1‑67
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATGTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:7436842/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTGAGCATCGCATCC  >  1:23101133/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:21729645/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:24036506/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:25538866/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:29520486/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:3080703/1‑68
                                         |||||||||||||||                                 
CATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3076111‑3076151
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCGGATAAGATGCGCCAGCATCGCATCC  >  CP009273/3667798‑3667830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.