| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3076151 | NA (NA) | 11 (0.040) +ATTTCGCAGCAATCT |
3/82 | NT | 5.5% | noncoding (103/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 3667798 = | 259 (0.670) | noncoding (58/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 472 total aligned reads displayed.
CTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTC > CP009273/3667731‑3667865 | aaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg < 1:11744732/68‑1 (MQ=255) aaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg < 1:29391278/68‑1 (MQ=255) aaaCAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg < 1:736250/68‑1 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:10385839/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:18272812/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:23822522/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:24249577/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:17052499/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:25463244/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:25571158/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:3785674/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:4086359/1‑67 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATAAGATTTTATTCGGCCTGGCTCCCCGTAgg > 1:18154026/1‑67 (MQ=255) aTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGcc > 1:13817009/1‑68 (MQ=255) gccggatgcgatgctggcgcatCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCgg < 1:11449824‑M1/46‑1 (MQ=255) acgCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCgg < 1:9345299/66‑1 (MQ=255) aGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCgg < 1:20156807/68‑1 (MQ=255) aGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCgg < 1:1454133/68‑1 (MQ=255) cgCCGGATCCGGCGTAAACGCATTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGa < 1:483319/67‑1 (MQ=37) cggatgcgatgctggcgcatCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGAt < 1:10219982‑M1/48‑1 (MQ=255) ccGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGa < 1:2606505/66‑1 (MQ=255) ccGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATa > 1:19106138/1‑68 (MQ=255) ccGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATa > 1:28049603/1‑68 (MQ=255) ggATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAg < 1:25085208/68‑1 (MQ=255) ggATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAg < 1:29940477/68‑1 (MQ=255) tGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGAt > 1:12012779/1‑67 (MQ=255) ggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATgcg < 1:15665420/67‑1 (MQ=255) ggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATgcg < 1:30363071/67‑1 (MQ=255) ggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATgcg < 1:13410917/67‑1 (MQ=255) cgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGcc < 1:24562903/67‑1 (MQ=255) cgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCa > 1:30908958/1‑68 (MQ=255) aaaCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgca < 1:16284907/68‑1 (MQ=255) cGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatc > 1:5521438/1‑67 (MQ=255) cGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatc > 1:17248906/1‑67 (MQ=255) gCCGTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatcgc < 1:9743082/68‑1 (MQ=255) TTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatcgcatc > 1:28577030‑M1/1‑68 (MQ=255) cgcatcttatccggcctacgatttcgcagcaatctGTAGGCCGGATAAGATGCGTCAGCATCGCATcc > 1:21729645‑M2/36‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGTCTCCCCTTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:23051236‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgc > 1:29117938‑M1/1‑58 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:8490281‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:15216080‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:15890392‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:12819927‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:3371389‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:24933488‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:21113897‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:5322221‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:18872512‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:711222‑M1/1‑68 (MQ=255) ATCCGGCATACGATTTTATTCGGCCTGGCACCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:14867794‑M1/1‑68 (MQ=255) ATCCGGCATACGATATTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:29817952‑M1/1‑68 (MQ=255) ATCAGGCATACGATTTTATTCGGCCTGGATCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg > 1:32008038‑M1/1‑68 (MQ=255) TCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg < 1:363308‑M1/67‑1 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGGTCCCGGTTGGCCGGATAAGATTCGCCAGCATCGCATCCGGc > 1:31080116‑M1/1‑68 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATTAGATGCGCCAGCATCGCATCCg < 1:12329647‑M1/66‑1 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg < 1:5939539‑M1/66‑1 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGc > 1:20272366‑M1/1‑68 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGc > 1:14664726‑M1/1‑68 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGc > 1:1659954‑M1/1‑68 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGc > 1:4352020‑M1/1‑68 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGc < 1:17604075‑M1/68‑1 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGc > 1:5821559‑M1/1‑68 (MQ=255) CCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGc > 1:22668800‑M1/1‑68 (MQ=255) CGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCt < 1:2723875‑M1/68‑1 (MQ=255) CGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCt < 1:134677‑M1/68‑1 (MQ=255) CATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCtat > 1:8012836‑M1/1‑67 (MQ=255) aTACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATaa < 1:19818046/68‑1 (MQ=255) tACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAAt < 1:22312145/68‑1 (MQ=255) aTTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgcgc > 1:24192095/1‑68 (MQ=255) ttttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgcgc < 1:11162441/67‑1 (MQ=255) ttttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGca < 1:9055412/68‑1 (MQ=255) ttttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGca < 1:23640476/68‑1 (MQ=255) ttttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGca < 1:8354357/68‑1 (MQ=255) atttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGca < 1:10750304/67‑1 (MQ=255) ttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGcaca < 1:21279561/68‑1 (MQ=255) ttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGcaca < 1:27528477/68‑1 (MQ=255) ttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGcaca < 1:26550322/68‑1 (MQ=255) aTTCGGCCTGGCTCCCCGCAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATa > 1:12466820/1‑68 (MQ=255) tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAAt > 1:22081826/1‑57 (MQ=255) tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATag > 1:20797715/1‑66 (MQ=255) tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATaa > 1:8176325/1‑67 (MQ=255) tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATaa > 1:30659828/1‑67 (MQ=255) tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATaa > 1:6185397/1‑67 (MQ=255) tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATaa > 1:7814762/1‑67 (MQ=255) tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATaa > 1:6832650/1‑67 (MQ=255) tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATaa > 1:19588541/1‑67 (MQ=255) cGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAAcc < 1:18001782/68‑1 (MQ=255) cGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAAcc < 1:22021503/68‑1 (MQ=255) cTGGCTCCCCGTGGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct < 1:14219424/67‑1 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct < 1:22815543/67‑1 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct < 1:7536992/67‑1 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct < 1:6647354/67‑1 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct < 1:25976685/67‑1 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct < 1:8663742/67‑1 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct < 1:20454992/67‑1 (MQ=255) tCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGaa > 1:2686791/1‑66 (MQ=255) ccccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACt < 1:23253349/68‑1 (MQ=255) cGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGATACTCg > 1:2472367/1‑67 (MQ=255) cGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCg > 1:26258410/1‑67 (MQ=255) gTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGt > 1:31514577/1‑67 (MQ=255) | CTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTC > CP009273/3667731‑3667865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |