| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3087432 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (108/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 3087442 | NA (NA) | noncoding (118/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
Only 100 of 119 total aligned reads displayed.
ATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3087359‑3087432‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgatGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < CP009273/3087442‑3087376 ATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG < 1:20270079/68‑1ATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG < 1:24579404/68‑1ATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG < 1:7204553/68‑1ATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG < 1:19156158/68‑1ATCTGGCAGCGGCTATAGGTCTGAAAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG < 1:14272313/68‑1 TCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTTTTGCCTTTGTAGG > 1:8510018/1‑67 TCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG > 1:17354187/1‑67 TCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGG > 1:23946672/1‑67 CTGGCAGCGGCTATAGGTCTGATTAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCC < 1:26162467/68‑1 CTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCC < 1:30299327/68‑1 TGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCC > 1:8668565/1‑68 GGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCG < 1:10065364/68‑1 GGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCG > 1:19419608/1‑68 GGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCG < 1:13658315/68‑1 GGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCG < 1:13502496/68‑1 GGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCG < 1:13165029/68‑1 GGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCG < 1:2699600/68‑1 GGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCG < 1:9378445/68‑1 GCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGA > 1:26667632/1‑68 GCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGA > 1:24090523/1‑68 GCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGA > 1:29626215/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:2780717/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:19562019/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:29654753/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:19026793/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:21854599/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:22625363/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:22715001/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:23134041/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:28980503/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:2514691/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:25914143/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:5280187/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:13120863/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:13797555/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:6910181/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:14794754/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:15289469/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:15351276/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:5677848/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:16007284/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:5566723/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:1719132/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:17456151/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:1793745/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:18283939/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:3812858/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:1752080/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCAGAT > 1:13472655/1‑68 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGC > 1:31261095/1‑63 CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGC > 1:3572230/1‑63 ACATTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGCGTACAAAGGCAATAAATGTCTGAT > 1:23042670/1‑67 TTTATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCG > 1:4662488/1‑67 ATTGCCTTTGTAGGCCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGAC > 1:18000053/1‑66 aGCCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGGCTGATGCGACGCTAACGCGTCTTA < 1:21368633/67‑1 CCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATC > 1:25522375/1‑68 CCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATC > 1:19636642/1‑68 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCA > 1:3690366/1‑68 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCA > 1:2414486/1‑68 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCA > 1:6315727/1‑68 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCA > 1:19030137/1‑68 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCA > 1:28386834/1‑68 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCA > 1:19562871/1‑68 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCA > 1:31059650/1‑68 CCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCA > 1:26387516/1‑68 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:10103954/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:28476932/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:31403070/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:15376945/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:24321276/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:23191306/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:20390278/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:13917896/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:10902131/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:13509928/68‑1 GATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGA < 1:18135272/68‑1 TGCTCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:6549107/67‑1 TGCGCAAGCTTATCGGGCCTACGAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:17053419/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:13402608/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:15114628/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:6235462/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:5186485/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:1795208/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:3634024/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:30582311/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:19925848/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:29241827/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:25306319/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:27946035/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:28364801/68‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:943236/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:9336190/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:16433674/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:16832461/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:17946925/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:18569786/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:18830506/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:19593052/67‑1 TGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGAC < 1:27736239/67‑1 TGCGCAAGCTTATCGGGCCTACAAACGCAATATAAGTCTGATGCGACGCTAACGCGTCTTATCAGACC < 1:1232856/68‑1 ATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3087359‑3087432‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgatGCGCAAGCTTATCGGGCCTACAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAGACC < CP009273/3087442‑3087376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |