| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3087432 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (108/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 3087442 | NA (NA) | noncoding (118/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
Only 100 of 468 total aligned reads displayed.
AGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTA > CP009273/3087375‑3087508 | gTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:17946925‑M2/67‑2 (MQ=255) gTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:18830506‑M2/67‑2 (MQ=255) gTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:19796903‑M2/67‑2 (MQ=255) tCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatc < 1:18135272‑M2/68‑4 (MQ=255) tCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatc < 1:31403070‑M2/68‑4 (MQ=255) tCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatc < 1:20390278‑M2/68‑4 (MQ=255) tGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatcgg > 1:19030137‑M2/1‑63 (MQ=255) gATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatcggg > 1:973629‑M2/1‑62 (MQ=255) tAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCa > 1:24901594/1‑68 (MQ=255) tAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCa > 1:29706453/1‑68 (MQ=255) tAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCa > 1:17419950/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:24275633/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:2159512/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:20581939/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:13403475/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:30292979/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa < 1:16081798/68‑1 (MQ=255) cgcgTTAGCGACGCATCAGACATTTATAGCCGTTCTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:634130/1‑68 (MQ=37) gTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACg < 1:19482389/68‑1 (MQ=255) gTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACg < 1:9403063/68‑1 (MQ=255) tAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGt < 1:16635159/67‑1 (MQ=255) gTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACaa > 1:10254501/1‑68 (MQ=255) gTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACaa > 1:13062579/1‑68 (MQ=255) aTCAGACATTTATTGCCTTTGTACGCCCGATAAGCTTGCGCatcgggcctacaaaggcaataaatgt > 1:23042670‑M2/1‑41 (MQ=255) gACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGcc < 1:12128216/64‑1 (MQ=255) aCATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTc > 1:5812737/1‑67 (MQ=255) cATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTcc < 1:20779038/67‑1 (MQ=255) cATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTcc < 1:27564499/67‑1 (MQ=255) cATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTcc > 1:5519846/1‑67 (MQ=255) tATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCAc < 1:16845177/68‑1 (MQ=255) aTTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCAc > 1:13604638/1‑67 (MQ=255) aTTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCAc > 1:12015334/1‑67 (MQ=255) aTTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCAc > 1:3500241/1‑67 (MQ=255) tGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCCCCCg > 1:25981746/1‑68 (MQ=255) tGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCg > 1:4550447/1‑68 (MQ=255) gCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCgg > 1:5953530/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCCCCCGGt > 1:26993328/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:27713807/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:8565804/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:3718666/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:10637501/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:3935288/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:14699978/1‑68 (MQ=255) gtttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:11305610/66‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:22780694/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:25565654/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:26406450/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:643017/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:23160602/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:28089989/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:29205343/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:1277296/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:4457161/67‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:14529859/1‑66 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:2893643/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:23272582/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:23474397/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:5020057/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:7861511/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:24542250/68‑1 (MQ=255) tGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTg < 1:1650212/68‑1 (MQ=255) tGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTg < 1:22439156/68‑1 (MQ=255) tGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTg < 1:22289292/68‑1 (MQ=255) tGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTg < 1:21107703/68‑1 (MQ=255) tAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt > 1:10422688/1‑68 (MQ=255) tAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt > 1:15726573/1‑68 (MQ=255) tAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt > 1:31650425/1‑68 (MQ=255) aGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATa < 1:17511820/68‑1 (MQ=255) ggCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATa > 1:15299802/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATacc > 1:87819/1‑65 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATaag > 1:7646555/1‑66 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAct > 1:17722985/1‑68 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:1245359/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:11415528/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:20157561/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:14159983/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:18610838/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:1826245/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:17092346/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:7225187/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:10014176/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:22139255/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:30784864/1‑67 (MQ=255) ccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAct < 1:2537126/67‑1 (MQ=255) ccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAct < 1:8171885/67‑1 (MQ=255) ccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAct < 1:10692618/67‑1 (MQ=255) cGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAActct < 1:4245793/68‑1 (MQ=255) tAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCCCCCGGTGCTGATAActct > 1:1106192/1‑65 (MQ=255) tAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTctgc < 1:11722193/67‑1 (MQ=255) tAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTctgc < 1:21875427/67‑1 (MQ=255) tAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTctgc < 1:30129121/67‑1 (MQ=255) cTTGCGCATCGGGCATGGCAACGTCACAACCGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGaa > 1:31926221/1‑67 (MQ=255) cTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGAAAACTATGCTGaa > 1:28567042/1‑67 (MQ=255) ttGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGaa < 1:14899752/66‑1 (MQ=255) tGCGCATCGGGCATGGCAACGTCACAAACGCCCTT‑CCCCACCCGGTGCTGATAACTCTGCTGAAACGt < 1:23679455/68‑1 (MQ=255) gcgcATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGt < 1:19970804/68‑1 (MQ=255) gcATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGtt < 1:20964791/67‑1 (MQ=255) gcATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTa > 1:31156360/1‑68 (MQ=255) gcATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTa > 1:31761691/1‑68 (MQ=255) cATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTa > 1:24077334/1‑67 (MQ=255) | AGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTA > CP009273/3087375‑3087508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |