| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3087432 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (108/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 3087442 | NA (NA) | noncoding (118/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
Only 100 of 524 total aligned reads displayed.
CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCT > CP009273/3087365‑3087499 | cAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:15289469‑M1/1‑68 (MQ=255)cAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:28980503‑M1/1‑68 (MQ=255)cAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:18283939‑M1/1‑68 (MQ=255)cAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:21854599‑M1/1‑68 (MQ=255)cAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:5677848‑M1/1‑68 (MQ=255)cAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGAT > 1:25914143‑M1/1‑68 (MQ=255) aGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATa > 1:16007069/1‑68 (MQ=255) cTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCt < 1:9648012/67‑1 (MQ=255) ggTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTgcg > 1:27858352/1‑66 (MQ=255) ggTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:6235462‑M2/68‑2 (MQ=255) ggTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:3634024‑M2/68‑2 (MQ=255) gTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGc > 1:2979811/1‑60 (MQ=255) gTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:19796903‑M2/67‑2 (MQ=255) gTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:19593052‑M2/67‑2 (MQ=255) gTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:17946925‑M2/67‑2 (MQ=255) gTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCa < 1:16433674‑M2/67‑2 (MQ=255) tCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatc < 1:28476932‑M2/68‑4 (MQ=255) tCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatc < 1:13917896‑M2/68‑4 (MQ=255) tCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatc < 1:10902131‑M2/68‑4 (MQ=255) tGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatcgg > 1:26387516‑M2/1‑63 (MQ=255) tGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatcgg > 1:19030137‑M2/1‑63 (MQ=255) gATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatcggg > 1:973629‑M2/1‑62 (MQ=255) tAAGACGCGTTAGCGTCGCATCAGCCATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatcgggct < 1:21368633‑M2/68‑9 (MQ=255) tAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTCGGCCCGATAAGCTTGCGCATCGGGCa > 1:20312169/1‑68 (MQ=255) tAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCa > 1:17419950/1‑68 (MQ=255) tAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCa > 1:29609588/1‑68 (MQ=255) aaGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCAt > 1:17183416/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa < 1:16081798/68‑1 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:24275633/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:6386086/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:17736901/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:13716005/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:18242711/1‑68 (MQ=255) cgcgTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCa > 1:18648415/1‑68 (MQ=255) gTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTgcgc < 1:31216994/52‑1 (MQ=255) gTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACg < 1:9392178/68‑1 (MQ=255) tAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGt < 1:16635159/67‑1 (MQ=255) tAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTc > 1:24493995/1‑68 (MQ=255) gTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCatcgggcctacaaaggcaat > 1:18000053‑M2/1‑46 (MQ=255) gTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACaa > 1:19457670/1‑68 (MQ=255) gTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACaa > 1:830112/1‑68 (MQ=255) aGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCt > 1:30157282/1‑67 (MQ=255) aCATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTc > 1:12665296/1‑67 (MQ=255) cATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTcc > 1:13030229/1‑67 (MQ=255) cATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTcc > 1:10400297/1‑67 (MQ=255) cATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTcc > 1:25547439/1‑67 (MQ=255) cATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTc < 1:27552120/66‑1 (MQ=255) tttATTGCCTTTGTAGGCCCGATgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcg > 1:4662488‑M1/1‑23 (MQ=255) gCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCgg > 1:10626199/1‑68 (MQ=255) gCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCgg > 1:22614065/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCTTGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:31700391/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCCCCCGGt > 1:5395517/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCCCCCGGt > 1:26993328/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:3935288/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:3718666/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:11873708/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:11247732/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:15016984/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:14699978/1‑68 (MQ=255) ccTTTGTAGGCCCGATAAGCTTGAGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:2367565/1‑68 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:29205343/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:16878801/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:18883544/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:24870570/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:20022159/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:24087935/67‑1 (MQ=255) cTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt < 1:31501656/67‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGt > 1:14529859/1‑66 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:31924073/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:7973986/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:5020057/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:21106049/68‑1 (MQ=255) tttGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGc < 1:20566363/68‑1 (MQ=255) aGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt > 1:12081166/1‑67 (MQ=255) aGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATa > 1:23405469/1‑68 (MQ=255) aGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATa < 1:17511820/68‑1 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATacc > 1:87819/1‑65 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATaag > 1:7646555/1‑66 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:4372298/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:5912039/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:10156165/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:22139255/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:10014176/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:11415528/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:20719894/1‑67 (MQ=255) cccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAc > 1:30843943/1‑67 (MQ=255) ccGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAct < 1:2537126/67‑1 (MQ=255) gATgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcaga < 1:23191306‑M1/68‑66 (MQ=255) gATgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcaga < 1:15376945‑M1/68‑66 (MQ=255) gATgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcaga < 1:13509928‑M1/68‑66 (MQ=255) tgctcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcagac < 1:6549107‑M1/67‑67 (MQ=255) tgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcagacc < 1:28364801‑M1/68‑68 (MQ=255) tgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcagacc < 1:30582311‑M1/68‑68 (MQ=255) tgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcagac < 1:22378221‑M1/67‑67 (MQ=255) tgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcagac < 1:7380203‑M1/67‑67 (MQ=255) tgcgcaagcttatcgggcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcagac < 1:13379683‑M1/67‑67 (MQ=255) tgcgcaagcttatcgggcctacaaacgcaatataagtctgatgcgacgctaacgcgtcttatcagacc < 1:1232856‑M1/68‑68 (MQ=255) tAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTctgc < 1:2309183/67‑1 (MQ=255) tAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTctgc < 1:22808290/67‑1 (MQ=255) tAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTctgc < 1:27728033/67‑1 (MQ=255) | CAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCT > CP009273/3087365‑3087499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |