| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3451774 | 356 (0.920) | 21 (0.060) | 5/96 | NT | 5.4% | coding (77/1482 nt) | gspE | general secretory pathway component, cryptic |
| ? | CP009273 | = 3451779 | 437 (1.320) | coding (82/1482 nt) | gspE | general secretory pathway component, cryptic | |||||
Only 100 of 182 total aligned reads displayed.
GAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3451700‑3451774‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgagatAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGGTACGG < CP009273/3451779‑3451713 GAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG < 1:10304251/68‑1GAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG < 1:2258144/68‑1GAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:18699379/1‑68GAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:18213369/1‑68GAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:4648821/1‑68GAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTCGTTATCTCTATTCAGAGG > 1:3127988/1‑68 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATTTCTATTCAGAGG > 1:13194036/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:17397775/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:26041469/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:20587749/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:1960020/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:29431500/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:17072730/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:4169116/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:10653295/1‑67 AGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:6921438/1‑67 AGAACTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGG > 1:26295975/1‑67 GAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGC > 1:1145941/1‑68 GAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGC > 1:18652605/1‑68 GAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGC > 1:12305606/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGA > 1:6804553/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGA > 1:31637583/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGA > 1:4419780/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGA > 1:5105558/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGA > 1:4740799/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGA > 1:11874407/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGA > 1:25448146/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGA > 1:4829224/1‑68 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGC < 1:21870764/66‑1 ATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCACTATTCAGAGGGCGA > 1:30364973/1‑68 TTCACTCACCGTACCCCTCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:4977886/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGTCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:5611058/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:24601294/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:9645865/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:23394097/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:27249227/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:29056779/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:29331265/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:8351680/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:8287267/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:31109396/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:10540086/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:21850480/68‑1 TTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAG < 1:19874798/68‑1 TCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGA < 1:23024128/68‑1 TCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGA < 1:795592/68‑1 TCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGA < 1:29381341/68‑1 TCACTCACCGTAACCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGA < 1:30189978/68‑1 CACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAT < 1:904912/68‑1 CACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAT < 1:7895963/68‑1 CACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAT < 1:14071484/68‑1 CACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAT < 1:32077120/68‑1 CACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAT < 1:2262694/68‑1 CGAATTGGTTATCTCTATTCAGAGGGCGAGATAAATTATCTCGCCCTCTGATTAGAGATAACCAATTC > 1:31844122/1‑68 GGTTATCTCTATTCAGAGGGCGAGATATATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGT > 1:9521761/1‑67 GGTTATCTCTATTCAGAGGGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGT > 1:16226031/1‑67 GGTTATCTCTATTCAGAGGGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGT > 1:15823347/1‑67 GGTTATCTCTATTCAGAGGGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGT > 1:21615464/1‑67 GGTTATCTCTATTCAGAGGGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGT > 1:15165140/1‑67 TTATCTCTATTCAGAGGGCGAGATAAATAATCTCGCCCGCTGAATAGAGATAACCAATTCGTTGTGCC > 1:20354912/1‑68 TCTATTCAGAGGGCGGGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGGCAGCG > 1:11782681/1‑67 TCAGAGGGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCA > 1:26190232/1‑66 TCAGAGGGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCA > 1:15191189/1‑66 TCAGAGGGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCA > 1:17650995/1‑66 TCAGAGGGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCA > 1:13177858/1‑66 GGCGAGATAAATAATCTCGCCGTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:23568578/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:23973496/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:563349/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:14692658/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:15056253/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:5670926/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:6364521/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:12850369/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:7397905/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:12148958/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:25976260/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:26281724/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:22661427/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:27129849/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:27180758/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:27855853/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:2414942/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:19299556/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:29877955/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:30719889/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:17931691/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG < 1:8663347/68‑1 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:17445422/1‑68 GGCGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATGCGTTGTGCCAGCGCCCAACTGGCGG < 1:12687125/68‑1 GGCGAGATAAATAATCTCGCCCTCAGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGG > 1:21715349/1‑68 CGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGG > 1:20096306/1‑68 CGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGG < 1:5315507/67‑1 CGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGG < 1:29245922/67‑1 CGAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGG < 1:6606535/67‑1 GAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGG < 1:10820139/67‑1 GAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGG < 1:31366900/67‑1 GAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGG < 1:30831446/67‑1 GAGATAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGG < 1:21214830/67‑1 TAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGGTACG < 1:6192096/67‑1 TAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGGTACG < 1:18316897/67‑1 GAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3451700‑3451774‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgagatAAATAATCTCGCCCTCTGAATAGAGATAACCAATTCGTTGTGCCAGCGCCCAACTGGCGGGGTACGG < CP009273/3451779‑3451713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |