| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3451774 | 356 (0.920) | 21 (0.060) | 5/96 | NT | 5.4% | coding (77/1482 nt) | gspE | general secretory pathway component, cryptic |
| ? | CP009273 | = 3451779 | 437 (1.320) | coding (82/1482 nt) | gspE | general secretory pathway component, cryptic | |||||
Only 100 of 604 total aligned reads displayed.
ACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGACCAT > CP009273/3451712‑3451846 | acCGTACCCCGCTCGTTGGGCGCTGGCACAACGAATTGGATATCTCTATTCAGAGGGCGAGAttattt < 1:23097818/68‑1 (MQ=255)acCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAttattt > 1:24973590/1‑68 (MQ=255)acCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAttattt > 1:17757776/1‑68 (MQ=255)acCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAttattt > 1:5969656/1‑68 (MQ=255) ccccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctc < 1:30831446‑M2/67‑6 (MQ=255) cccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcg < 1:19975374‑M2/67‑7 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc < 1:27129849‑M2/68‑9 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc < 1:23973496‑M2/68‑9 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc > 1:17445422‑M2/1‑60 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc > 1:17931691‑M2/1‑60 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc > 1:12850369‑M2/1‑60 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc < 1:6364521‑M2/68‑9 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc > 1:7397905‑M2/1‑60 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc < 1:20662773‑M2/68‑9 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGACGGCGAGATTATTTatctcgcc > 1:23568578‑M2/1‑60 (MQ=255) cGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCg < 1:17259709/68‑1 (MQ=255) tGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgccctctga > 1:13177858‑M2/1‑52 (MQ=255) tGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgccctctga > 1:7943728‑M2/1‑52 (MQ=255) tGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgccctctga > 1:29751264‑M2/1‑52 (MQ=255) tGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGcc > 1:19029186/1‑68 (MQ=255) tGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGcc < 1:14909215/68‑1 (MQ=255) gcTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGCTACGCCATTCg > 1:15358087/1‑68 (MQ=255) gcTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCg > 1:4232182/1‑68 (MQ=255) gcTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCg > 1:4949443/1‑68 (MQ=255) gcTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCg > 1:5779397/1‑68 (MQ=255) gcTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCg < 1:12272849/68‑1 (MQ=255) acaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgccctctgaatagagataacc > 1:15823347‑M2/1‑41 (MQ=255) acaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGt < 1:2873816/68‑1 (MQ=255) acaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGt < 1:5528831/68‑1 (MQ=255) acaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGt > 1:8199551/1‑68 (MQ=255) acaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGt < 1:8615885/68‑1 (MQ=255) acaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATATatctcgccctctgaatagagataacc > 1:9521761‑M2/1‑41 (MQ=255) aCGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTAc < 1:24250142/68‑1 (MQ=255) gAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTc < 1:29272311/68‑1 (MQ=255) gAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTc < 1:11384821/68‑1 (MQ=255) ttGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGat < 1:2047903/68‑1 (MQ=255) tGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGata < 1:12529991/68‑1 (MQ=255) ggTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGatat > 1:30411790/1‑68 (MQ=255) ttATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATAtt < 1:13612628/67‑1 (MQ=255) ttATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTc > 1:3359613/1‑68 (MQ=255) ttATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTc > 1:22101272/1‑68 (MQ=255) ttATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTc > 1:26728432/1‑68 (MQ=255) tctcTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAAc < 1:19771464/68‑1 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:26382124/1‑67 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:31360061/1‑67 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:30030825/1‑67 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:25828609/1‑67 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:23478779/1‑67 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:22919931/1‑67 (MQ=255) tctAGTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGCGCGGTTACTCGATATTCAACg > 1:6248719/1‑67 (MQ=255) aTTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAg < 1:18337716/68‑1 (MQ=255) aTTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAg < 1:26128222/68‑1 (MQ=255) aTTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAg < 1:30732051/68‑1 (MQ=255) aTTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAg < 1:2731853/68‑1 (MQ=255) aTTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAg < 1:2786301/68‑1 (MQ=255) aTTCAGAGGGCGAGATTATTTATCTCGCCGATACCCCATTCGAGCGGTTACTCGATATTCAACGTCAg < 1:31663220/68‑1 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:10819980/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:9238902/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:18723474/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:20953220/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:21559615/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:15616851/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:28370958/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:12100671/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCAATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:16759490/1‑68 (MQ=255) cAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGtt > 1:15131466/1‑68 (MQ=255) cAGAGGGCGAGATTATTTATCTCGCAGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGtt > 1:25622266/1‑68 (MQ=255) gagGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTg > 1:5321840/1‑67 (MQ=255) gagGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTg > 1:31081031/1‑67 (MQ=255) gagGGAGAGATTATTTATCTCGCCGATACGCCATTCGAGAGGTTACTCGATATTCAACGTCAGGTTg > 1:21414565/1‑67 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTgg < 1:27556631/66‑1 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGcc > 1:21143341/1‑68 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGcc > 1:6856660/1‑68 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGcc > 1:22699200/1‑68 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGcc > 1:8690985/1‑68 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:10520397/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:6566660/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:7691557/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:11942553/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:12728559/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:7118094/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:19499144/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:4738654/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:14416342/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:2161675/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:1701335/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:31821416/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:14144432/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:24644433/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:2531589/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:16536589/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTg < 1:20200824/68‑1 (MQ=255) tatttatCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGa < 1:13305965/68‑1 (MQ=255) atttatCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGAc < 1:14658616/68‑1 (MQ=255) atttatCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGAc < 1:3668846/68‑1 (MQ=255) ttatCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGACCa > 1:16229902/1‑68 (MQ=255) ttatCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGACCa > 1:10033360/1‑68 (MQ=255) ttatCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGACCa > 1:3896671/1‑68 (MQ=255) ttatCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGACCa > 1:45275/1‑68 (MQ=255) tatCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGACCAt > 1:5153815/1‑68 (MQ=255) | ACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGACCAT > CP009273/3451712‑3451846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |