| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3451774 | 356 (0.920) | 21 (0.060) | 5/96 | NT | 5.4% | coding (77/1482 nt) | gspE | general secretory pathway component, cryptic |
| ? | CP009273 | = 3451779 | 437 (1.320) | coding (82/1482 nt) | gspE | general secretory pathway component, cryptic | |||||
Only 100 of 687 total aligned reads displayed.
CACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAG > CP009273/3451707‑3451841 | actcacCGTACCCCGCCAGTTGGGCGCTGGCTCAACGAATTGGTTATCTCTATTCAGAGGGCGAGatt < 1:2606192/68‑1 (MQ=255) actcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatt > 1:18626181/1‑68 (MQ=255) actcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatt < 1:17321359/68‑1 (MQ=255) actcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatt < 1:29092420/68‑1 (MQ=255) actcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatt < 1:445361/68‑1 (MQ=255) actcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatt > 1:5562116/1‑68 (MQ=255) ctcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatta < 1:16832539/68‑1 (MQ=255) ctcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatta > 1:6987333/1‑68 (MQ=255) ctcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatta < 1:12256161/68‑1 (MQ=255) ctcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatta > 1:14792894/1‑68 (MQ=255) ctcacCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGatta > 1:31469091/1‑68 (MQ=255) ctcacCGTACCCCGCCAGATCGGCGCTGGCAGTACGAATTGGATAACACTATTCACAGGGCCAGatta > 1:19601849/1‑68 (MQ=255) acCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAttattt > 1:4156738/1‑68 (MQ=255) acCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAttattt > 1:12849505/1‑68 (MQ=255) acCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGAttattt > 1:12576675/1‑68 (MQ=255) cGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTa < 1:6192096‑M2/67‑2 (MQ=255) ccccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctc < 1:21214830‑M2/67‑6 (MQ=255) ccccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctc < 1:7206791‑M2/67‑6 (MQ=255) ccccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctc < 1:10820139‑M2/67‑6 (MQ=255) cccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcg < 1:19975374‑M2/67‑7 (MQ=255) cccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcg < 1:16584690‑M2/67‑7 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc < 1:5670926‑M2/68‑9 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc > 1:5853584‑M2/1‑60 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc < 1:8663347‑M2/68‑9 (MQ=255) ccGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc < 1:27129849‑M2/68‑9 (MQ=255) cagccAGTTCGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgcc > 1:31137892‑M2/3‑60 (MQ=255) ccAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGAt > 1:383313/1‑68 (MQ=255) ccAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGAt > 1:17931551/1‑68 (MQ=255) cAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgccctc > 1:24017611‑M2/1‑56 (MQ=255) taggCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGcc < 1:22556027/66‑1 (MQ=255) tGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATAc < 1:26652752/65‑1 (MQ=255) tGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGcc < 1:18286465/68‑1 (MQ=255) cacaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCg < 1:1054057/67‑1 (MQ=255) acaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTatctcgccctctgaatagagataacc > 1:15165140‑M2/1‑41 (MQ=255) acaACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGt < 1:4988647/68‑1 (MQ=255) aCGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTAc < 1:24250142/68‑1 (MQ=255) aCGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTAc < 1:23499583/68‑1 (MQ=255) aCGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTAc < 1:12117565/68‑1 (MQ=255) cGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTAc > 1:7505765/1‑67 (MQ=255) cGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACt < 1:21590635/68‑1 (MQ=255) gAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTc < 1:29272311/68‑1 (MQ=255) gAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTc < 1:31802378/68‑1 (MQ=255) gAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTc < 1:21447326/68‑1 (MQ=255) ttGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGat < 1:19797705/68‑1 (MQ=255) ggTTATCTCTATTCAGAGGGCGAGATatataatctcgccctctgaatagagataaccaattcgttgt > 1:9521761‑M1/1‑26 (MQ=255) ggTTATCTCTATTCAGAGGGCGAGATaaataatctcgccctctgaatagagataaccaattcgttgt > 1:22970683‑M1/1‑26 (MQ=255) ggTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGatat < 1:11958746/68‑1 (MQ=255) ttATCTCTATTCAGAGGGCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgcc > 1:25856604‑M1/1‑24 (MQ=255) ttATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATAtt < 1:13612628/67‑1 (MQ=255) ttATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTc > 1:6818360/1‑68 (MQ=255) tctcTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAAc < 1:13109351/68‑1 (MQ=255) tctATTCAGAGGGCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcg > 1:23726566‑M1/1‑19 (MQ=255) tctATTCAGAGGGCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcg > 1:14165420‑M1/1‑19 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:5240031/1‑67 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:7819377/1‑67 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:21066647/1‑67 (MQ=255) tctATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACg > 1:26332467/1‑67 (MQ=255) aTTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAg < 1:10135447/68‑1 (MQ=255) aTTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAg < 1:5353099/68‑1 (MQ=255) tCAGAGGGCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgccca > 1:15839076‑M1/1‑14 (MQ=255) tCAGAGGGCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgccca > 1:30732420‑M1/1‑14 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:15452907/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:18926316/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:25387821/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:14438987/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:30438154/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:20470296/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:7999352/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:13280586/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:8483868/1‑68 (MQ=255) tCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGt > 1:27256091/1‑68 (MQ=255) cAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGtt > 1:15624121/1‑68 (MQ=255) cAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGtt > 1:6348935/1‑68 (MQ=255) cAGAGGGCGAGATTATTTATCTCGCAGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGtt > 1:25622266/1‑68 (MQ=255) gagGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTg > 1:16243619/1‑67 (MQ=255) gagGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTg > 1:20179731/1‑67 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTgg < 1:27556631/66‑1 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGcc > 1:22699200/1‑68 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGcc > 1:28214321/1‑68 (MQ=255) gggCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGc < 1:6482495/67‑1 (MQ=255) ggCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcgg > 1:15056253‑M1/1‑8 (MQ=255) ggCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcgg < 1:12723252‑M1/68‑61 (MQ=255) ggCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcgg < 1:19299556‑M1/68‑61 (MQ=255) ggCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcgg < 1:11699154‑M1/68‑61 (MQ=255) ggCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcgg < 1:20662773‑M1/68‑61 (MQ=255) ggCGAGATaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcgg > 1:31080915‑M1/1‑8 (MQ=255) ggCGAGATaaataatctcgccctcagaatagagataaccaattcgttgtgccagcgcccaactggcgg > 1:21715349‑M1/1‑8 (MQ=255) gagaTaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcgggg < 1:30831446‑M1/67‑63 (MQ=255) gagaTaaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcgggg < 1:30165151‑M1/67‑63 (MQ=255) gagaTTATTTATCTCGCCGATACGCCTTTCGAGCGGTTACTCGATATTCAACGTCAGGTTCGCCAGt < 1:23232356/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:24644433/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:25090837/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:4738654/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:32125198/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:2987070/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGt < 1:9100821/67‑1 (MQ=255) gagaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTg < 1:27799577/68‑1 (MQ=255) agaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTg > 1:17140672/1‑67 (MQ=255) gaTTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGc < 1:1761699/67‑1 (MQ=255) taaataatctcgccctctgaatagagataaccaattcgttgtgccagcgcccaactggcggggtacgg < 1:3623619‑M1/68‑68 (MQ=255) | CACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTATTTATCTCGCCGATACGCCATTCGAGCGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAG > CP009273/3451707‑3451841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |